miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11951 5' -61.4 NC_003278.1 + 90 0.8 0.027457
Target:  5'- uCCUGGCCGcaucggcucauUCGCCGGCgcgcgcagucgucCCCCCGCCa -3'
miRNA:   3'- cGGACCGGU-----------AGUGGCUGa------------GGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 3001 0.67 0.266385
Target:  5'- aCCUGGCgAUCACCGaacggccgcaGCgcgaacggcuuguagUCCUCCGaCCa -3'
miRNA:   3'- cGGACCGgUAGUGGC----------UG---------------AGGGGGC-GG- -5'
11951 5' -61.4 NC_003278.1 + 3057 0.69 0.19862
Target:  5'- gGCCguucGGUgAUCGCCagguguggcugGGCUaugaCCCCGCCg -3'
miRNA:   3'- -CGGa---CCGgUAGUGG-----------CUGAg---GGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 4744 1.13 0.000078
Target:  5'- gGCCUGGCCAUCACCGACUCCCCCGCCa -3'
miRNA:   3'- -CGGACCGGUAGUGGCUGAGGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 5019 0.68 0.220502
Target:  5'- aCCUGGCCGaacUCggcuuggguGCgGGCUUCCuuGCCc -3'
miRNA:   3'- cGGACCGGU---AG---------UGgCUGAGGGggCGG- -5'
11951 5' -61.4 NC_003278.1 + 5049 0.67 0.270426
Target:  5'- uGCUcGGCgAUCGCuuCGACggCCUCGCCg -3'
miRNA:   3'- -CGGaCCGgUAGUG--GCUGagGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 5178 0.67 0.284251
Target:  5'- aGUgUcGCCcUgACCGACugcuaaccgUCCCCCGCCc -3'
miRNA:   3'- -CGgAcCGGuAgUGGCUG---------AGGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 5865 0.71 0.140136
Target:  5'- cGUCgGcGCCGUUGCCGACUaccaCCuuGCCg -3'
miRNA:   3'- -CGGaC-CGGUAGUGGCUGAg---GGggCGG- -5'
11951 5' -61.4 NC_003278.1 + 6565 0.69 0.209314
Target:  5'- cCCUGGaCAUCGCCGACUacgUgCUCGCa -3'
miRNA:   3'- cGGACCgGUAGUGGCUGA---GgGGGCGg -5'
11951 5' -61.4 NC_003278.1 + 6947 0.66 0.32124
Target:  5'- cUCUGGCgGUUgACCGAgCguaCCCCgCGCCc -3'
miRNA:   3'- cGGACCGgUAG-UGGCU-Ga--GGGG-GCGG- -5'
11951 5' -61.4 NC_003278.1 + 7825 0.71 0.147978
Target:  5'- gGCCUGGCCGacCACgGccccaccCUCCCCCcugGCCu -3'
miRNA:   3'- -CGGACCGGUa-GUGgCu------GAGGGGG---CGG- -5'
11951 5' -61.4 NC_003278.1 + 8093 0.66 0.306026
Target:  5'- gGCCUGGUCG-CGCCuGCUgucgcugaUCCUGCCg -3'
miRNA:   3'- -CGGACCGGUaGUGGcUGAg-------GGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 8365 0.69 0.197577
Target:  5'- cGCCUGGUCugcuaccagcgCugCGGCgcccgCUUCCGCCg -3'
miRNA:   3'- -CGGACCGGua---------GugGCUGa----GGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 8440 0.69 0.208768
Target:  5'- uCCaUGGCCAUCugCGgccuggaaauccuGCUCUaCCGCCc -3'
miRNA:   3'- cGG-ACCGGUAGugGC-------------UGAGGgGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 9050 0.68 0.244407
Target:  5'- cGCCUGGCgAacgcUCGCCagaucGACgauaCCgCCGCCc -3'
miRNA:   3'- -CGGACCGgU----AGUGG-----CUGa---GGgGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 9140 0.66 0.313563
Target:  5'- cGCCUGGgcuaCGUCAgCGuGCaggCCUUCGCCg -3'
miRNA:   3'- -CGGACCg---GUAGUgGC-UGa--GGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 9252 0.66 0.306026
Target:  5'- cGCUgaaGGCUcgaaaauggGCCGACUUCgCCCGCCu -3'
miRNA:   3'- -CGGa--CCGGuag------UGGCUGAGG-GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 9572 0.78 0.042874
Target:  5'- gGCCUGGCgggaaagcugggCGUCGCUGGCUUUCCuCGCCa -3'
miRNA:   3'- -CGGACCG------------GUAGUGGCUGAGGGG-GCGG- -5'
11951 5' -61.4 NC_003278.1 + 9753 0.7 0.173949
Target:  5'- gGCCgcuuaCCAUCAgUGGCUgUCCCGCCg -3'
miRNA:   3'- -CGGacc--GGUAGUgGCUGAgGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 9854 0.7 0.173949
Target:  5'- gGCCUGGCCuggGCCGAgUgCgCCGCg -3'
miRNA:   3'- -CGGACCGGuagUGGCUgAgGgGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.