miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11951 5' -61.4 NC_003278.1 + 20831 0.68 0.220502
Target:  5'- aGCCUuGCCAucacccUCGCCGGCaUUCUCgGCCc -3'
miRNA:   3'- -CGGAcCGGU------AGUGGCUG-AGGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 31745 0.7 0.169354
Target:  5'- cGCCUGGCCgguGUC-CCGGgcaCCCUGCUg -3'
miRNA:   3'- -CGGACCGG---UAGuGGCUgagGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 9753 0.7 0.173949
Target:  5'- gGCCgcuuaCCAUCAgUGGCUgUCCCGCCg -3'
miRNA:   3'- -CGGacc--GGUAGUgGCUGAgGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 9854 0.7 0.173949
Target:  5'- gGCCUGGCCuggGCCGAgUgCgCCGCg -3'
miRNA:   3'- -CGGACCGGuagUGGCUgAgGgGGCGg -5'
11951 5' -61.4 NC_003278.1 + 19432 0.7 0.178654
Target:  5'- aGCagaUGGCCGcCGCCGGCaaccCCaCCCGCg -3'
miRNA:   3'- -CGg--ACCGGUaGUGGCUGa---GG-GGGCGg -5'
11951 5' -61.4 NC_003278.1 + 14019 0.69 0.183472
Target:  5'- cGCCUGGaCCugcgcaucaCGCCGGacaUCCuggCCCGCCa -3'
miRNA:   3'- -CGGACC-GGua-------GUGGCUg--AGG---GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 8365 0.69 0.197577
Target:  5'- cGCCUGGUCugcuaccagcgCugCGGCgcccgCUUCCGCCg -3'
miRNA:   3'- -CGGACCGGua---------GugGCUGa----GGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 8440 0.69 0.208768
Target:  5'- uCCaUGGCCAUCugCGgccuggaaauccuGCUCUaCCGCCc -3'
miRNA:   3'- cGG-ACCGGUAGugGC-------------UGAGGgGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 6565 0.69 0.209314
Target:  5'- cCCUGGaCAUCGCCGACUacgUgCUCGCa -3'
miRNA:   3'- cGGACCgGUAGUGGCUGA---GgGGGCGg -5'
11951 5' -61.4 NC_003278.1 + 12538 0.7 0.164869
Target:  5'- cGCCUGaGCCGuguccagaUCACCGGCcagaaCCUgGCCg -3'
miRNA:   3'- -CGGAC-CGGU--------AGUGGCUGag---GGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 21698 0.7 0.16049
Target:  5'- cGCa-GGCCAUCACCaucGACaaccgUCCCCCGgUCa -3'
miRNA:   3'- -CGgaCCGGUAGUGG---CUG-----AGGGGGC-GG- -5'
11951 5' -61.4 NC_003278.1 + 13147 0.7 0.16049
Target:  5'- uGCCUcGGCCGUCAgCCca-UCgCCUGCCg -3'
miRNA:   3'- -CGGA-CCGGUAGU-GGcugAGgGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 32251 0.76 0.060491
Target:  5'- aGCCUGcgcGCCGUCGgCGACaUCCUCgGCCg -3'
miRNA:   3'- -CGGAC---CGGUAGUgGCUG-AGGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 33221 0.73 0.107559
Target:  5'- gGCCgaGGCCAUCGCCGGCgugaugggcaccaCCCUGUUg -3'
miRNA:   3'- -CGGa-CCGGUAGUGGCUGag-----------GGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 32642 0.72 0.109368
Target:  5'- cGCCcGGCCAagGCaCGuACUCCgUCGCCg -3'
miRNA:   3'- -CGGaCCGGUagUG-GC-UGAGGgGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 21457 0.71 0.128379
Target:  5'- gGCCUGGCCcagggccucggCGCCGGCcaggCCggCCCGCUg -3'
miRNA:   3'- -CGGACCGGua---------GUGGCUGa---GG--GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 11893 0.71 0.142448
Target:  5'- cGCCgcgGGCCggCGCCGACcgcgaauggaacgCCCCCaCCc -3'
miRNA:   3'- -CGGa--CCGGuaGUGGCUGa------------GGGGGcGG- -5'
11951 5' -61.4 NC_003278.1 + 7825 0.71 0.147978
Target:  5'- gGCCUGGCCGacCACgGccccaccCUCCCCCcugGCCu -3'
miRNA:   3'- -CGGACCGGUa-GUGgCu------GAGGGGG---CGG- -5'
11951 5' -61.4 NC_003278.1 + 10474 0.71 0.152047
Target:  5'- -aCUGGgCAggGCCGAUUCUCCgCGCCc -3'
miRNA:   3'- cgGACCgGUagUGGCUGAGGGG-GCGG- -5'
11951 5' -61.4 NC_003278.1 + 27118 0.71 0.152047
Target:  5'- cGCuCUGcggcGCCAccuUCACCGGCUCCCUgaGCUg -3'
miRNA:   3'- -CG-GAC----CGGU---AGUGGCUGAGGGGg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.