miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11956 5' -54.9 NC_003278.1 + 20772 0.66 0.638891
Target:  5'- uGUGcAGCAGGuGACUgaGGUCGGCGGCg- -3'
miRNA:   3'- cCAC-UUGUUC-CUGG--UCGGCCGUUGgc -5'
11956 5' -54.9 NC_003278.1 + 18936 0.66 0.638891
Target:  5'- aGGUcGAGC-AGGugCAgGCCGcGCAguucGCCa -3'
miRNA:   3'- -CCA-CUUGuUCCugGU-CGGC-CGU----UGGc -5'
11956 5' -54.9 NC_003278.1 + 22958 0.66 0.638891
Target:  5'- cGGUGGcgGCAAGacuGCCAGCggccUGGCGcuGCCGc -3'
miRNA:   3'- -CCACU--UGUUCc--UGGUCG----GCCGU--UGGC- -5'
11956 5' -54.9 NC_003278.1 + 23248 0.66 0.627548
Target:  5'- -----cCAGGGGCCGGCCGG--ACCu -3'
miRNA:   3'- ccacuuGUUCCUGGUCGGCCguUGGc -5'
11956 5' -54.9 NC_003278.1 + 14765 0.66 0.627548
Target:  5'- cGGUGAccGCAcGGuagguGCCGGCAcccacGCCGg -3'
miRNA:   3'- -CCACU--UGUuCCuggu-CGGCCGU-----UGGC- -5'
11956 5' -54.9 NC_003278.1 + 12625 0.66 0.627548
Target:  5'- -aUGAGCAccuGGCCGGCCaGGUucuGGCCGg -3'
miRNA:   3'- ccACUUGUuc-CUGGUCGG-CCG---UUGGC- -5'
11956 5' -54.9 NC_003278.1 + 5993 0.66 0.627548
Target:  5'- cGG-GAaguACuugucguGGACCAGCUcGCGGCCGa -3'
miRNA:   3'- -CCaCU---UGuu-----CCUGGUCGGcCGUUGGC- -5'
11956 5' -54.9 NC_003278.1 + 5204 0.66 0.593586
Target:  5'- cGGUGAcCGGGGGCCGcuGCUGuuGGCUGu -3'
miRNA:   3'- -CCACUuGUUCCUGGU--CGGCcgUUGGC- -5'
11956 5' -54.9 NC_003278.1 + 7166 0.67 0.586822
Target:  5'- uGGUGGGCcagaAGGGAucgcuguugaugugcCCGGCUGG-GACCGg -3'
miRNA:   3'- -CCACUUG----UUCCU---------------GGUCGGCCgUUGGC- -5'
11956 5' -54.9 NC_003278.1 + 8892 0.67 0.5711
Target:  5'- -cUGGGCAAcGGCaAGCCGGCAAUCc -3'
miRNA:   3'- ccACUUGUUcCUGgUCGGCCGUUGGc -5'
11956 5' -54.9 NC_003278.1 + 8090 0.67 0.5711
Target:  5'- --cGAGCAGGGcACCGaacagcaugccGCCGuCAACCGg -3'
miRNA:   3'- ccaCUUGUUCC-UGGU-----------CGGCcGUUGGC- -5'
11956 5' -54.9 NC_003278.1 + 3478 0.67 0.5711
Target:  5'- -cUGAACAAGGucGCCAGCgguaUGGCGAUg- -3'
miRNA:   3'- ccACUUGUUCC--UGGUCG----GCCGUUGgc -5'
11956 5' -54.9 NC_003278.1 + 16560 0.67 0.537789
Target:  5'- ---uGGCGAGGAUggaCAGCCGGUcGCCa -3'
miRNA:   3'- ccacUUGUUCCUG---GUCGGCCGuUGGc -5'
11956 5' -54.9 NC_003278.1 + 11931 0.68 0.5041
Target:  5'- cGGcGAugccCAAGGcaGCCAGCCGGuCAgcaggucGCCGg -3'
miRNA:   3'- -CCaCUu---GUUCC--UGGUCGGCC-GU-------UGGC- -5'
11956 5' -54.9 NC_003278.1 + 22354 0.68 0.494488
Target:  5'- cGGUac-CGAGGACCgAGCCGagcagaucgguGCGGCCGu -3'
miRNA:   3'- -CCAcuuGUUCCUGG-UCGGC-----------CGUUGGC- -5'
11956 5' -54.9 NC_003278.1 + 30770 0.68 0.483907
Target:  5'- aGGaGAACGAGG--UAGCCGGCcucACCGc -3'
miRNA:   3'- -CCaCUUGUUCCugGUCGGCCGu--UGGC- -5'
11956 5' -54.9 NC_003278.1 + 19035 0.68 0.483907
Target:  5'- aGGUcGGCcGGGuCCAuGCCGGUGGCCu -3'
miRNA:   3'- -CCAcUUGuUCCuGGU-CGGCCGUUGGc -5'
11956 5' -54.9 NC_003278.1 + 7859 0.68 0.483907
Target:  5'- cGUGGuucgccuCGAGGACCGccucggucacGCCGGCGgugcgACCGu -3'
miRNA:   3'- cCACUu------GUUCCUGGU----------CGGCCGU-----UGGC- -5'
11956 5' -54.9 NC_003278.1 + 12499 0.69 0.46308
Target:  5'- --gGAGCAucGAUCAGCucCGGCAACUGg -3'
miRNA:   3'- ccaCUUGUucCUGGUCG--GCCGUUGGC- -5'
11956 5' -54.9 NC_003278.1 + 15046 0.69 0.46308
Target:  5'- cGGUGAACGccaaAGGACUGGuuaCCGG-AGCCa -3'
miRNA:   3'- -CCACUUGU----UCCUGGUC---GGCCgUUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.