miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11960 5' -59.3 NC_003278.1 + 17121 0.69 0.269438
Target:  5'- uCGAgugGaaaGGCGGUgGCGUCGGCGUCUu -3'
miRNA:   3'- -GCUa--Cgg-CCGCUAaUGCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 7023 0.69 0.269438
Target:  5'- cCGA-GCCGGCGgg-GCGCgGGguaCGCUCg -3'
miRNA:   3'- -GCUaCGGCCGCuaaUGCGgCC---GCGGG- -5'
11960 5' -59.3 NC_003278.1 + 29709 0.69 0.268075
Target:  5'- gGAuuUGCCGGCaccggccuCGCCGGUGgCCu -3'
miRNA:   3'- gCU--ACGGCCGcuaau---GCGGCCGCgGG- -5'
11960 5' -59.3 NC_003278.1 + 21717 0.69 0.262678
Target:  5'- nCGA-GCaccaGGgcacCGAUgGCGCCGGCGCUCu -3'
miRNA:   3'- -GCUaCGg---CC----GCUAaUGCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 8470 0.69 0.256057
Target:  5'- cCGAgcagGCUGGCGAgcaacgagACGCUgcggcggaagcgGGCGCCg -3'
miRNA:   3'- -GCUa---CGGCCGCUaa------UGCGG------------CCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 16557 0.69 0.256057
Target:  5'- ---cGCUGGCGAggauggACaGCCGGuCGCCa -3'
miRNA:   3'- gcuaCGGCCGCUaa----UG-CGGCC-GCGGg -5'
11960 5' -59.3 NC_003278.1 + 21218 0.69 0.249573
Target:  5'- uGAUGUaccGCGccuuCGCCGGCGUCCu -3'
miRNA:   3'- gCUACGgc-CGCuaauGCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 21053 0.69 0.249573
Target:  5'- --uUGCCgccgucguGGCGGUgcugGCCGGCGCCg -3'
miRNA:   3'- gcuACGG--------CCGCUAaug-CGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 16633 0.69 0.249573
Target:  5'- aGGUGgUGGUGGcgUGCGaCCGGCuGUCCa -3'
miRNA:   3'- gCUACgGCCGCUa-AUGC-GGCCG-CGGG- -5'
11960 5' -59.3 NC_003278.1 + 12426 0.69 0.248932
Target:  5'- gGAUGUCGGCGAUcgacuggcggaugUGUGCCaagcgggcgagGGCGCCg -3'
miRNA:   3'- gCUACGGCCGCUA-------------AUGCGG-----------CCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 20264 0.69 0.243225
Target:  5'- aCGGcccUGCuCGGCa---ACGCUGGCGUCCa -3'
miRNA:   3'- -GCU---ACG-GCCGcuaaUGCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 14223 0.69 0.243225
Target:  5'- uGAcGCCGGCGGc-GCGCCcGGCGagacggcugacCCCa -3'
miRNA:   3'- gCUaCGGCCGCUaaUGCGG-CCGC-----------GGG- -5'
11960 5' -59.3 NC_003278.1 + 21531 0.69 0.243225
Target:  5'- gCGG-GCCGGCcug---GCCGGCGCCg -3'
miRNA:   3'- -GCUaCGGCCGcuaaugCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 14796 0.69 0.243225
Target:  5'- --cUGCCGGCGGUgacgAUGCCauuGGCGUUg -3'
miRNA:   3'- gcuACGGCCGCUAa---UGCGG---CCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 29316 0.69 0.243225
Target:  5'- cCGcUGCCGGUGAagaucGCaCCGGCGgCCa -3'
miRNA:   3'- -GCuACGGCCGCUaa---UGcGGCCGCgGG- -5'
11960 5' -59.3 NC_003278.1 + 7261 0.7 0.237012
Target:  5'- uCGcgGCCGGC---UAUGCCGaacuCGCCCa -3'
miRNA:   3'- -GCuaCGGCCGcuaAUGCGGCc---GCGGG- -5'
11960 5' -59.3 NC_003278.1 + 33275 0.7 0.237012
Target:  5'- ---cGCCGGCGAUgGCcucggccgcaGCCGGCGgaaCCg -3'
miRNA:   3'- gcuaCGGCCGCUAaUG----------CGGCCGCg--GG- -5'
11960 5' -59.3 NC_003278.1 + 29641 0.7 0.224985
Target:  5'- uCGAggccaCCGGCGAg---GCCGGUGCCg -3'
miRNA:   3'- -GCUac---GGCCGCUaaugCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 19171 0.7 0.219168
Target:  5'- aGA-GCCGGUccaUAUGguCCGGCGCCCa -3'
miRNA:   3'- gCUaCGGCCGcuaAUGC--GGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 19796 0.7 0.21348
Target:  5'- cCGGUGCCGGCcAgcGCGgCaGCGCUCu -3'
miRNA:   3'- -GCUACGGCCGcUaaUGCgGcCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.