miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11969 3' -60.4 NC_003278.1 + 20969 0.72 0.123244
Target:  5'- uGUUGaucggCCCGCUgGUGAcCGCCCUGC-GCg -3'
miRNA:   3'- -CGACa----GGGCGG-CACU-GCGGGACGuCG- -5'
11969 3' -60.4 NC_003278.1 + 21318 0.67 0.289149
Target:  5'- cGCUGaagCgCGCCGgcaggucGAUGCCCagGUAGCc -3'
miRNA:   3'- -CGACa--GgGCGGCa------CUGCGGGa-CGUCG- -5'
11969 3' -60.4 NC_003278.1 + 22562 0.66 0.350712
Target:  5'- gGCUGcucgcgaUCCCcCCGcgcGGCGCCgUGCuGCa -3'
miRNA:   3'- -CGAC-------AGGGcGGCa--CUGCGGgACGuCG- -5'
11969 3' -60.4 NC_003278.1 + 22829 0.66 0.343249
Target:  5'- cGCUGgcgggCCUGCCGa----UCCUGCAGCu -3'
miRNA:   3'- -CGACa----GGGCGGCacugcGGGACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 28176 0.66 0.319206
Target:  5'- aGgUGUCgCCGCaCuUGccGCGCCC-GCAGCg -3'
miRNA:   3'- -CgACAG-GGCG-GcAC--UGCGGGaCGUCG- -5'
11969 3' -60.4 NC_003278.1 + 30869 0.7 0.196099
Target:  5'- cGCUGUCgCGCUG-GGCGaUCgGCAGCa -3'
miRNA:   3'- -CGACAGgGCGGCaCUGCgGGaCGUCG- -5'
11969 3' -60.4 NC_003278.1 + 31035 0.66 0.327077
Target:  5'- cGCUGggCCGCaGcGACG-CUUGCAGCa -3'
miRNA:   3'- -CGACagGGCGgCaCUGCgGGACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 31148 0.67 0.303892
Target:  5'- ----aCCCGCC-UGGCGCCCagcgcccucUGguGCg -3'
miRNA:   3'- cgacaGGGCGGcACUGCGGG---------ACguCG- -5'
11969 3' -60.4 NC_003278.1 + 31938 0.66 0.343249
Target:  5'- aGCUGaugaacacggcaUCCgGUCG--GCGCCCgccgGCGGCg -3'
miRNA:   3'- -CGAC------------AGGgCGGCacUGCGGGa---CGUCG- -5'
11969 3' -60.4 NC_003278.1 + 32532 0.71 0.145531
Target:  5'- uGCUGUCguuCCaaCCGUGcACGCCCaUGUAGCc -3'
miRNA:   3'- -CGACAG---GGc-GGCAC-UGCGGG-ACGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.