miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11971 3' -55.8 NC_003278.1 + 7775 0.68 0.393096
Target:  5'- aCUACGGuCGCAccGCCGGCGugaccGAGGCGg- -3'
miRNA:   3'- aGAUGCC-GCGU--CGGUUGU-----CUUCGCgc -5'
11971 3' -55.8 NC_003278.1 + 16073 0.68 0.402555
Target:  5'- --aGCGuGCacguucacucuGCAGCgAGCAGggGCGUGa -3'
miRNA:   3'- agaUGC-CG-----------CGUCGgUUGUCuuCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 2035 0.67 0.451931
Target:  5'- --cGCGGCGCauguacuuGGCCAGCGGcgccuGCaGCGg -3'
miRNA:   3'- agaUGCCGCG--------UCGGUUGUCuu---CG-CGC- -5'
11971 3' -55.8 NC_003278.1 + 3631 0.67 0.451931
Target:  5'- gCUugGGCcuuGCuGGCCGACAGGAauaucugguuGCGCc -3'
miRNA:   3'- aGAugCCG---CG-UCGGUUGUCUU----------CGCGc -5'
11971 3' -55.8 NC_003278.1 + 8671 0.67 0.451931
Target:  5'- aCUuCGGCGCcGCC-ACcGAGGaCGCGg -3'
miRNA:   3'- aGAuGCCGCGuCGGuUGuCUUC-GCGC- -5'
11971 3' -55.8 NC_003278.1 + 1640 0.67 0.471546
Target:  5'- cCUGCGGgucuaucCGCAGCUGAUGGggGUGg- -3'
miRNA:   3'- aGAUGCC-------GCGUCGGUUGUCuuCGCgc -5'
11971 3' -55.8 NC_003278.1 + 4356 0.68 0.392159
Target:  5'- --cGCGcGCGCGGCCcagcaaucaAGCGGGauuguagGGCGCGg -3'
miRNA:   3'- agaUGC-CGCGUCGG---------UUGUCU-------UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 5744 0.69 0.383784
Target:  5'- --gGCGGCGCGGUUggUGGuAGcCGCGg -3'
miRNA:   3'- agaUGCCGCGUCGGuuGUCuUC-GCGC- -5'
11971 3' -55.8 NC_003278.1 + 8444 0.69 0.36471
Target:  5'- gCUGCGGCggaagcgggcgccGCAGCgcuggUAGCAGAccaggcgcAGCGCGg -3'
miRNA:   3'- aGAUGCCG-------------CGUCG-----GUUGUCU--------UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 32639 0.7 0.330228
Target:  5'- --aGCGGCGCAcGCCGuacugcugguauuGCAGGgcguuugccGGCGCGc -3'
miRNA:   3'- agaUGCCGCGU-CGGU-------------UGUCU---------UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 19626 0.7 0.314711
Target:  5'- gUUGCgGGUGCugAGCCGGCGuugcuGAGGCGCGu -3'
miRNA:   3'- aGAUG-CCGCG--UCGGUUGU-----CUUCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 33908 0.67 0.483097
Target:  5'- --gGCuGGUGUAGCCG-CGGAAGcCGCu -3'
miRNA:   3'- agaUG-CCGCGUCGGUuGUCUUC-GCGc -5'
11971 3' -55.8 NC_003278.1 + 19445 0.67 0.483097
Target:  5'- cCUGuuGCGCGGCCAGCGc-GGUGCu -3'
miRNA:   3'- aGAUgcCGCGUCGGUUGUcuUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 10000 0.67 0.493715
Target:  5'- ---cCGGCacgGCGGCgAGCAGAuGCGCu -3'
miRNA:   3'- agauGCCG---CGUCGgUUGUCUuCGCGc -5'
11971 3' -55.8 NC_003278.1 + 23237 0.67 0.504438
Target:  5'- aCU-CGGCGCGGgCGGCGcgcaGGGCGCu -3'
miRNA:   3'- aGAuGCCGCGUCgGUUGUc---UUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 19796 0.66 0.515261
Target:  5'- ---cCGGUGcCGGCCAgcGCGGcAGCGCu -3'
miRNA:   3'- agauGCCGC-GUCGGU--UGUCuUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 9078 0.66 0.547147
Target:  5'- cUCgGCGGUGCcGCCGGCAuagccgcccgggcGAggguucaccAGCGCGg -3'
miRNA:   3'- -AGaUGCCGCGuCGGUUGU-------------CU---------UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 28029 0.66 0.559409
Target:  5'- --gGCGGCGCAGCaCGuCGGccuuGAGCucGCGg -3'
miRNA:   3'- agaUGCCGCGUCG-GUuGUC----UUCG--CGC- -5'
11971 3' -55.8 NC_003278.1 + 26660 0.66 0.559409
Target:  5'- --gGCGGCGCAuucgcguccGCCAGgGuAGGCGCc -3'
miRNA:   3'- agaUGCCGCGU---------CGGUUgUcUUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 35529 0.75 0.13825
Target:  5'- uUCUGCGGacccCAGCCAGCAGGcuuggcgGGCGCu -3'
miRNA:   3'- -AGAUGCCgc--GUCGGUUGUCU-------UCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.