miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11971 3' -55.8 NC_003278.1 + 6028 0.66 0.537178
Target:  5'- --gGCGGCcuGCcGCCggUGGAAGUGCc -3'
miRNA:   3'- agaUGCCG--CGuCGGuuGUCUUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 31620 0.67 0.461168
Target:  5'- gCUGCGGCcugggcgGCGGCgCcGCAGGcuucaaccgGGCGCGu -3'
miRNA:   3'- aGAUGCCG-------CGUCG-GuUGUCU---------UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 32941 0.67 0.4622
Target:  5'- aCUACGGCGUAGuuggguucgaCCAAUccgccGGCGCGg -3'
miRNA:   3'- aGAUGCCGCGUC----------GGUUGucu--UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 19660 0.67 0.483097
Target:  5'- --cGCaGCGCuuacgcaaccucAGCCAgcaGCAGGAGCGCc -3'
miRNA:   3'- agaUGcCGCG------------UCGGU---UGUCUUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 1481 0.67 0.493715
Target:  5'- gCUGCaGGCGC-GUCuGCAuuGGCGCGa -3'
miRNA:   3'- aGAUG-CCGCGuCGGuUGUcuUCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 14783 0.67 0.501211
Target:  5'- gCUACGGCaucacggacgcacuGCAuGCCAGC-GAGGCGg- -3'
miRNA:   3'- aGAUGCCG--------------CGU-CGGUUGuCUUCGCgc -5'
11971 3' -55.8 NC_003278.1 + 16737 0.67 0.504438
Target:  5'- gCUGCaGGCGUAccgccGCCAACu---GCGCGa -3'
miRNA:   3'- aGAUG-CCGCGU-----CGGUUGucuuCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 29213 0.66 0.514175
Target:  5'- --cGCGGCG--GCCAGCgaguucaAGAAGCGCc -3'
miRNA:   3'- agaUGCCGCguCGGUUG-------UCUUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 6471 0.66 0.526177
Target:  5'- aUUUcCGGCGUgcugcaGGCCGGCAaGGGCGCc -3'
miRNA:   3'- -AGAuGCCGCG------UCGGUUGUcUUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 17800 0.67 0.459106
Target:  5'- aCUACacccgcaccgcccaGGUGCuGGCCGACAcuaucgccGAAGCGCa -3'
miRNA:   3'- aGAUG--------------CCGCG-UCGGUUGU--------CUUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 8671 0.67 0.451931
Target:  5'- aCUuCGGCGCcGCC-ACcGAGGaCGCGg -3'
miRNA:   3'- aGAuGCCGCGuCGGuUGuCUUC-GCGC- -5'
11971 3' -55.8 NC_003278.1 + 3631 0.67 0.451931
Target:  5'- gCUugGGCcuuGCuGGCCGACAGGAauaucugguuGCGCc -3'
miRNA:   3'- aGAugCCG---CG-UCGGUUGUCUU----------CGCGc -5'
11971 3' -55.8 NC_003278.1 + 32147 0.72 0.24873
Target:  5'- aCUGCGGCGagcugggcggucUGGCCcagucGCGGAAGCGCu -3'
miRNA:   3'- aGAUGCCGC------------GUCGGu----UGUCUUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 18399 0.7 0.33106
Target:  5'- -gUACGGCGCAgucaguGCCAACGGcgucaugcuGCGCu -3'
miRNA:   3'- agAUGCCGCGU------CGGUUGUCuu-------CGCGc -5'
11971 3' -55.8 NC_003278.1 + 22950 0.69 0.365603
Target:  5'- cCUGCGGCcgguggcgGCAagacuGCCAGCGGccuGGCGCu -3'
miRNA:   3'- aGAUGCCG--------CGU-----CGGUUGUCu--UCGCGc -5'
11971 3' -55.8 NC_003278.1 + 32361 0.69 0.374619
Target:  5'- cCUGgcacUGGUGCgAGCCGGCAGcgacuGGCGCa -3'
miRNA:   3'- aGAU----GCCGCG-UCGGUUGUCu----UCGCGc -5'
11971 3' -55.8 NC_003278.1 + 10593 0.68 0.392159
Target:  5'- --gACGGCaGCgccuaugAGCCAcGCaAGAAGCGCGa -3'
miRNA:   3'- agaUGCCG-CG-------UCGGU-UG-UCUUCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 7775 0.68 0.393096
Target:  5'- aCUACGGuCGCAccGCCGGCGugaccGAGGCGg- -3'
miRNA:   3'- aGAUGCC-GCGU--CGGUUGU-----CUUCGCgc -5'
11971 3' -55.8 NC_003278.1 + 16073 0.68 0.402555
Target:  5'- --aGCGuGCacguucacucuGCAGCgAGCAGggGCGUGa -3'
miRNA:   3'- agaUGC-CG-----------CGUCGgUUGUCuuCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 2035 0.67 0.451931
Target:  5'- --cGCGGCGCauguacuuGGCCAGCGGcgccuGCaGCGg -3'
miRNA:   3'- agaUGCCGCG--------UCGGUUGUCuu---CG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.