miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11971 3' -55.8 NC_003278.1 + 10546 1.09 0.000456
Target:  5'- aUCUACGGCGCAGCCAACAGAAGCGCGu -3'
miRNA:   3'- -AGAUGCCGCGUCGGUUGUCUUCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 35529 0.75 0.13825
Target:  5'- uUCUGCGGacccCAGCCAGCAGGcuuggcgGGCGCu -3'
miRNA:   3'- -AGAUGCCgc--GUCGGUUGUCU-------UCGCGc -5'
11971 3' -55.8 NC_003278.1 + 31681 0.75 0.155435
Target:  5'- cCUGCGGCGCcGCCGcccaggccgcaGCAGAAGUGg- -3'
miRNA:   3'- aGAUGCCGCGuCGGU-----------UGUCUUCGCgc -5'
11971 3' -55.8 NC_003278.1 + 33263 0.75 0.155435
Target:  5'- cCU-CGGcCGCAGCCGGCGGAAcCGCa -3'
miRNA:   3'- aGAuGCC-GCGUCGGUUGUCUUcGCGc -5'
11971 3' -55.8 NC_003278.1 + 6687 0.74 0.169212
Target:  5'- cUCUuCGGCgaugacGCAGCCGGCGGuacGCGCGa -3'
miRNA:   3'- -AGAuGCCG------CGUCGGUUGUCuu-CGCGC- -5'
11971 3' -55.8 NC_003278.1 + 21413 0.73 0.2114
Target:  5'- --cGCGGCGCcGCCGACgcgcuGGAcGGCGCGc -3'
miRNA:   3'- agaUGCCGCGuCGGUUG-----UCU-UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 32147 0.72 0.24873
Target:  5'- aCUGCGGCGagcugggcggucUGGCCcagucGCGGAAGCGCu -3'
miRNA:   3'- aGAUGCCGC------------GUCGGu----UGUCUUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 10864 0.71 0.291345
Target:  5'- gCUGC-GCGUAGCUGACuucGGGAGCGCc -3'
miRNA:   3'- aGAUGcCGCGUCGGUUG---UCUUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 28583 0.7 0.314711
Target:  5'- --cACGGCGUcgauGCCGugguGCAGcAGCGCGa -3'
miRNA:   3'- agaUGCCGCGu---CGGU----UGUCuUCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 19626 0.7 0.314711
Target:  5'- gUUGCgGGUGCugAGCCGGCGuugcuGAGGCGCGu -3'
miRNA:   3'- aGAUG-CCGCG--UCGGUUGU-----CUUCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 32639 0.7 0.330228
Target:  5'- --aGCGGCGCAcGCCGuacugcugguauuGCAGGgcguuugccGGCGCGc -3'
miRNA:   3'- agaUGCCGCGU-CGGU-------------UGUCU---------UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 18399 0.7 0.33106
Target:  5'- -gUACGGCGCAgucaguGCCAACGGcgucaugcuGCGCu -3'
miRNA:   3'- agAUGCCGCGU------CGGUUGUCuu-------CGCGc -5'
11971 3' -55.8 NC_003278.1 + 8444 0.69 0.36471
Target:  5'- gCUGCGGCggaagcgggcgccGCAGCgcuggUAGCAGAccaggcgcAGCGCGg -3'
miRNA:   3'- aGAUGCCG-------------CGUCG-----GUUGUCU--------UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 22950 0.69 0.365603
Target:  5'- cCUGCGGCcgguggcgGCAagacuGCCAGCGGccuGGCGCu -3'
miRNA:   3'- aGAUGCCG--------CGU-----CGGUUGUCu--UCGCGc -5'
11971 3' -55.8 NC_003278.1 + 32361 0.69 0.374619
Target:  5'- cCUGgcacUGGUGCgAGCCGGCAGcgacuGGCGCa -3'
miRNA:   3'- aGAU----GCCGCG-UCGGUUGUCu----UCGCGc -5'
11971 3' -55.8 NC_003278.1 + 5744 0.69 0.383784
Target:  5'- --gGCGGCGCGGUUggUGGuAGcCGCGg -3'
miRNA:   3'- agaUGCCGCGUCGGuuGUCuUC-GCGC- -5'
11971 3' -55.8 NC_003278.1 + 4356 0.68 0.392159
Target:  5'- --cGCGcGCGCGGCCcagcaaucaAGCGGGauuguagGGCGCGg -3'
miRNA:   3'- agaUGC-CGCGUCGG---------UUGUCU-------UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 10593 0.68 0.392159
Target:  5'- --gACGGCaGCgccuaugAGCCAcGCaAGAAGCGCGa -3'
miRNA:   3'- agaUGCCG-CG-------UCGGU-UG-UCUUCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 7775 0.68 0.393096
Target:  5'- aCUACGGuCGCAccGCCGGCGugaccGAGGCGg- -3'
miRNA:   3'- aGAUGCC-GCGU--CGGUUGU-----CUUCGCgc -5'
11971 3' -55.8 NC_003278.1 + 16073 0.68 0.402555
Target:  5'- --aGCGuGCacguucacucuGCAGCgAGCAGggGCGUGa -3'
miRNA:   3'- agaUGC-CG-----------CGUCGgUUGUCuuCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.