Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11971 | 5' | -61 | NC_003278.1 | + | 8006 | 0.7 | 0.133294 |
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Target: 5'- gGGCGUAACCCUuccgguuGACGGCGGCauGCUg-- -3' miRNA: 3'- -UCGCGUUGGGG-------CUGCCGUCG--CGGaua -5' |
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| 11971 | 5' | -61 | NC_003278.1 | + | 17240 | 0.71 | 0.122837 |
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Target: 5'- uAGCGCggUCaUCGGCGGCgucAGCGCCg-- -3' miRNA: 3'- -UCGCGuuGG-GGCUGCCG---UCGCGGaua -5' |
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| 11971 | 5' | -61 | NC_003278.1 | + | 29816 | 0.71 | 0.112825 |
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Target: 5'- cAGCGacaaCAGCCgCGcCGGCGGCGCCg-- -3' miRNA: 3'- -UCGC----GUUGGgGCuGCCGUCGCGGaua -5' |
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| 11971 | 5' | -61 | NC_003278.1 | + | 5148 | 0.72 | 0.103581 |
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Target: 5'- cAGCaGCGGCCCCcggucaccgguGGCGGCAGUGUCg-- -3' miRNA: 3'- -UCG-CGUUGGGG-----------CUGCCGUCGCGGaua -5' |
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| 11971 | 5' | -61 | NC_003278.1 | + | 31346 | 0.74 | 0.075448 |
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Target: 5'- aAGCGaauCAGCCUCaaGGCGGCGGCGCCa-- -3' miRNA: 3'- -UCGC---GUUGGGG--CUGCCGUCGCGGaua -5' |
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| 11971 | 5' | -61 | NC_003278.1 | + | 31619 | 0.79 | 0.030299 |
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Target: 5'- uGCuGCGGCCUgGGCGGCGGCGCCg-- -3' miRNA: 3'- uCG-CGUUGGGgCUGCCGUCGCGGaua -5' |
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| 11971 | 5' | -61 | NC_003278.1 | + | 10581 | 1.06 | 0.000224 |
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Target: 5'- cAGCGCAACCCCGACGGCAGCGCCUAUg -3' miRNA: 3'- -UCGCGUUGGGGCUGCCGUCGCGGAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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