Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11971 | 5' | -61 | NC_003278.1 | + | 10581 | 1.06 | 0.000224 |
Target: 5'- cAGCGCAACCCCGACGGCAGCGCCUAUg -3' miRNA: 3'- -UCGCGUUGGGGCUGCCGUCGCGGAUA- -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 31619 | 0.79 | 0.030299 |
Target: 5'- uGCuGCGGCCUgGGCGGCGGCGCCg-- -3' miRNA: 3'- uCG-CGUUGGGgCUGCCGUCGCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 31346 | 0.74 | 0.075448 |
Target: 5'- aAGCGaauCAGCCUCaaGGCGGCGGCGCCa-- -3' miRNA: 3'- -UCGC---GUUGGGG--CUGCCGUCGCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 5148 | 0.72 | 0.103581 |
Target: 5'- cAGCaGCGGCCCCcggucaccgguGGCGGCAGUGUCg-- -3' miRNA: 3'- -UCG-CGUUGGGG-----------CUGCCGUCGCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 29816 | 0.71 | 0.112825 |
Target: 5'- cAGCGacaaCAGCCgCGcCGGCGGCGCCg-- -3' miRNA: 3'- -UCGC----GUUGGgGCuGCCGUCGCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 17240 | 0.71 | 0.122837 |
Target: 5'- uAGCGCggUCaUCGGCGGCgucAGCGCCg-- -3' miRNA: 3'- -UCGCGuuGG-GGCUGCCG---UCGCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 8006 | 0.7 | 0.133294 |
Target: 5'- gGGCGUAACCCUuccgguuGACGGCGGCauGCUg-- -3' miRNA: 3'- -UCGCGUUGGGG-------CUGCCGUCG--CGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 13188 | 0.7 | 0.137471 |
Target: 5'- cGGUGCAggccGCCCagggcaACGGCAGCGCCc-- -3' miRNA: 3'- -UCGCGU----UGGGgc----UGCCGUCGCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 30232 | 0.7 | 0.144969 |
Target: 5'- cGCGCAgaugaugGCCCugguCGACGcGCuGCGCCUGg -3' miRNA: 3'- uCGCGU-------UGGG----GCUGC-CGuCGCGGAUa -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 26593 | 0.7 | 0.145374 |
Target: 5'- cGGCGCcuACCCUGGCGGacgcgaauGCGCCg-- -3' miRNA: 3'- -UCGCGu-UGGGGCUGCCgu------CGCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 17329 | 0.7 | 0.15369 |
Target: 5'- cGCGCAuCCUCGGCGuGCcGgGCCUGg -3' miRNA: 3'- uCGCGUuGGGGCUGC-CGuCgCGGAUa -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 9015 | 0.7 | 0.157571 |
Target: 5'- cGgGCGGCUaugCCGGCGGCaccgccgagcaccAGCGCCUGg -3' miRNA: 3'- uCgCGUUGG---GGCUGCCG-------------UCGCGGAUa -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 30911 | 0.7 | 0.158008 |
Target: 5'- uGCGCGGCCUCGACc-CAGCGCUg-- -3' miRNA: 3'- uCGCGUUGGGGCUGccGUCGCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 19960 | 0.7 | 0.158008 |
Target: 5'- gGGUGCGGgCCUGuuGCcGCAGCGCCUGc -3' miRNA: 3'- -UCGCGUUgGGGC--UGcCGUCGCGGAUa -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 15977 | 0.69 | 0.161987 |
Target: 5'- cAGCGCcaguacaGACCgCCGGCGGCGuaGCCa-- -3' miRNA: 3'- -UCGCG-------UUGG-GGCUGCCGUcgCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 19605 | 0.69 | 0.161987 |
Target: 5'- gAGCGCGACCugcgcgcgcagauCCaGGCGGCcaauGGCGCCa-- -3' miRNA: 3'- -UCGCGUUGG-------------GG-CUGCCG----UCGCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 27898 | 0.69 | 0.162435 |
Target: 5'- cGCGCAGCCCCuGCGGCguauAGCGgUa-- -3' miRNA: 3'- uCGCGUUGGGGcUGCCG----UCGCgGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 28596 | 0.69 | 0.166973 |
Target: 5'- cGCGaCAGCCCgUGGCGGCaAGCuGCCg-- -3' miRNA: 3'- uCGC-GUUGGG-GCUGCCG-UCG-CGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 8730 | 0.69 | 0.166973 |
Target: 5'- cGCGU--CCUCGGUGGCGGCGCCg-- -3' miRNA: 3'- uCGCGuuGGGGCUGCCGUCGCGGaua -5' |
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11971 | 5' | -61 | NC_003278.1 | + | 15359 | 0.69 | 0.171625 |
Target: 5'- uGGCGguGgCCUGACGGCAGCagacauuCCUGc -3' miRNA: 3'- -UCGCguUgGGGCUGCCGUCGc------GGAUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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