miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11971 5' -61 NC_003278.1 + 696 0.67 0.237004
Target:  5'- aGGCGaacauuCCCCuaGugGGCGGCGCUg-- -3'
miRNA:   3'- -UCGCguu---GGGG--CugCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 2037 0.67 0.224814
Target:  5'- cGGCGCAuguaCuuGGCcaGCGGCGCCUGc -3'
miRNA:   3'- -UCGCGUug--GggCUGc-CGUCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 3378 0.68 0.202029
Target:  5'- gGGCGUcgagaaguAGgUCCGGCGGUAGCGCUUc- -3'
miRNA:   3'- -UCGCG--------UUgGGGCUGCCGUCGCGGAua -5'
11971 5' -61 NC_003278.1 + 5148 0.72 0.103581
Target:  5'- cAGCaGCGGCCCCcggucaccgguGGCGGCAGUGUCg-- -3'
miRNA:   3'- -UCG-CGUUGGGG-----------CUGCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 6091 0.68 0.218921
Target:  5'- uAGgGCAcuuCCaCCGGCGGCAG-GCCg-- -3'
miRNA:   3'- -UCgCGUu--GG-GGCUGCCGUCgCGGaua -5'
11971 5' -61 NC_003278.1 + 6962 0.68 0.20753
Target:  5'- gAGCGUAccccgcGCCCCGcCGGCuGGgGCCg-- -3'
miRNA:   3'- -UCGCGU------UGGGGCuGCCG-UCgCGGaua -5'
11971 5' -61 NC_003278.1 + 7419 0.66 0.276912
Target:  5'- uAGCGCucggccACUUCGGCGGCGGUGgCa-- -3'
miRNA:   3'- -UCGCGu-----UGGGGCUGCCGUCGCgGaua -5'
11971 5' -61 NC_003278.1 + 8006 0.7 0.133294
Target:  5'- gGGCGUAACCCUuccgguuGACGGCGGCauGCUg-- -3'
miRNA:   3'- -UCGCGUUGGGG-------CUGCCGUCG--CGGaua -5'
11971 5' -61 NC_003278.1 + 8340 0.66 0.291358
Target:  5'- cAGCGaccuCCUCGGauGCGGCGCCa-- -3'
miRNA:   3'- -UCGCguu-GGGGCUgcCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 8645 0.67 0.230841
Target:  5'- cGGCGcCAACCUCuacgagGACGGCcacuucGGCGCCg-- -3'
miRNA:   3'- -UCGC-GUUGGGG------CUGCCG------UCGCGGaua -5'
11971 5' -61 NC_003278.1 + 8730 0.69 0.166973
Target:  5'- cGCGU--CCUCGGUGGCGGCGCCg-- -3'
miRNA:   3'- uCGCGuuGGGGCUGCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 9015 0.7 0.157571
Target:  5'- cGgGCGGCUaugCCGGCGGCaccgccgagcaccAGCGCCUGg -3'
miRNA:   3'- uCgCGUUGG---GGCUGCCG-------------UCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 9106 0.67 0.247797
Target:  5'- gGGCGCcuUCCaGAucaugggguuccacUGGCAGCGCCUGg -3'
miRNA:   3'- -UCGCGuuGGGgCU--------------GCCGUCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 9602 0.68 0.196655
Target:  5'- aAGgGCGGCCUCGAgGGCcgugauGGUGCCg-- -3'
miRNA:   3'- -UCgCGUUGGGGCUgCCG------UCGCGGaua -5'
11971 5' -61 NC_003278.1 + 9681 0.66 0.263043
Target:  5'- aAGCGUu-CgCgGAUGGcCAGCGCCUGg -3'
miRNA:   3'- -UCGCGuuGgGgCUGCC-GUCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 10581 1.06 0.000224
Target:  5'- cAGCGCAACCCCGACGGCAGCGCCUAUg -3'
miRNA:   3'- -UCGCGUUGGGGCUGCCGUCGCGGAUA- -5'
11971 5' -61 NC_003278.1 + 13188 0.7 0.137471
Target:  5'- cGGUGCAggccGCCCagggcaACGGCAGCGCCc-- -3'
miRNA:   3'- -UCGCGU----UGGGgc----UGCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 13596 0.66 0.2988
Target:  5'- cAGCGUAAUUCCGguGCaGUagGGCGCCUGg -3'
miRNA:   3'- -UCGCGUUGGGGC--UGcCG--UCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 13677 0.66 0.263043
Target:  5'- uGCGCcagGGCUUCGGCGGCcaGGCGCUc-- -3'
miRNA:   3'- uCGCG---UUGGGGCUGCCG--UCGCGGaua -5'
11971 5' -61 NC_003278.1 + 14959 0.66 0.276912
Target:  5'- gGGCGCuGCaagCCGGCuGGCAGUGgCUGc -3'
miRNA:   3'- -UCGCGuUGg--GGCUG-CCGUCGCgGAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.