miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11975 5' -55.4 NC_003278.1 + 20224 0.7 0.368426
Target:  5'- cCGCGAGUACGGCcagAGCCuGgaGaCGGu -3'
miRNA:   3'- uGCGCUUAUGCCG---UCGGuCaaCgGCC- -5'
11975 5' -55.4 NC_003278.1 + 20523 0.66 0.550766
Target:  5'- uGCGCGccgucgAgGGCGGCCAGUU-CCa- -3'
miRNA:   3'- -UGCGCuua---UgCCGUCGGUCAAcGGcc -5'
11975 5' -55.4 NC_003278.1 + 20747 0.69 0.395919
Target:  5'- -gGCGAGcuCGcGCAGCCAGggGCUGu -3'
miRNA:   3'- ugCGCUUauGC-CGUCGGUCaaCGGCc -5'
11975 5' -55.4 NC_003278.1 + 21312 0.66 0.606826
Target:  5'- aGCGCGccggcaggucGAUGCccaGGUAGCCcAGgacGCCGGc -3'
miRNA:   3'- -UGCGC----------UUAUG---CCGUCGG-UCaa-CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 22049 0.67 0.503865
Target:  5'- gACGCGAucacccugcccggcGUGCuGCuGCCGGagcugGCCGGc -3'
miRNA:   3'- -UGCGCU--------------UAUGcCGuCGGUCaa---CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 22406 0.69 0.386608
Target:  5'- aGCGCGAcgcCGGCuauCCGG-UGCCGGu -3'
miRNA:   3'- -UGCGCUuauGCCGuc-GGUCaACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 22406 0.67 0.533135
Target:  5'- cACGCGGGcgaggGCGGCAucgaucacaggaugcGUCucagcaGGUUGCCGGc -3'
miRNA:   3'- -UGCGCUUa----UGCCGU---------------CGG------UCAACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 22735 0.66 0.573045
Target:  5'- gGCGCGGAUGCugagcacguccGGCGcGCCGcugUGCuCGGu -3'
miRNA:   3'- -UGCGCUUAUG-----------CCGU-CGGUca-ACG-GCC- -5'
11975 5' -55.4 NC_003278.1 + 22736 0.68 0.485797
Target:  5'- aGCGCGAacgcaGUugGaGCAGCCcgaAGacGCUGGg -3'
miRNA:   3'- -UGCGCU-----UAugC-CGUCGG---UCaaCGGCC- -5'
11975 5' -55.4 NC_003278.1 + 22900 0.69 0.405372
Target:  5'- -gGCGAggacuucgAUGCGGUGGCCAccGUgaaaGCCGGc -3'
miRNA:   3'- ugCGCU--------UAUGCCGUCGGU--CAa---CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 23048 0.68 0.475313
Target:  5'- -gGCGGgugagguugauGUGCGGCAgcGCCAGgccGCUGGc -3'
miRNA:   3'- ugCGCU-----------UAUGCCGU--CGGUCaa-CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 23228 0.67 0.496389
Target:  5'- cACGCucagcUACGcGCucGCCAGggGCCGGc -3'
miRNA:   3'- -UGCGcuu--AUGC-CGu-CGGUCaaCGGCC- -5'
11975 5' -55.4 NC_003278.1 + 26454 0.69 0.386608
Target:  5'- -gGCGAAgcccacCGcGCAGCCGuGUUGCuCGGg -3'
miRNA:   3'- ugCGCUUau----GC-CGUCGGU-CAACG-GCC- -5'
11975 5' -55.4 NC_003278.1 + 27287 0.79 0.091047
Target:  5'- cCGCGAGgucGCGGCGuGCCAGUUGaCGGg -3'
miRNA:   3'- uGCGCUUa--UGCCGU-CGGUCAACgGCC- -5'
11975 5' -55.4 NC_003278.1 + 29714 0.66 0.550766
Target:  5'- aGCGUGGAUuugcCGGCA-CCGGccucGCCGGu -3'
miRNA:   3'- -UGCGCUUAu---GCCGUcGGUCaa--CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 29888 0.68 0.485797
Target:  5'- uCGCGcGUugGGCgugaccGGCCAGaagaccGCCGGc -3'
miRNA:   3'- uGCGCuUAugCCG------UCGGUCaa----CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 30824 0.67 0.522218
Target:  5'- aGCGCGAcaGCGGCcagagcggcgugaucGGUCGGUuccUGCuCGGc -3'
miRNA:   3'- -UGCGCUuaUGCCG---------------UCGGUCA---ACG-GCC- -5'
11975 5' -55.4 NC_003278.1 + 30856 0.67 0.50601
Target:  5'- -gGCGAu--CGGCAGCaggcguuucagcgCGGUgagGCCGGc -3'
miRNA:   3'- ugCGCUuauGCCGUCG-------------GUCAa--CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 31228 0.66 0.584266
Target:  5'- cUGCGAGUGCuGCA-UCAGUUGUCaGGa -3'
miRNA:   3'- uGCGCUUAUGcCGUcGGUCAACGG-CC- -5'
11975 5' -55.4 NC_003278.1 + 32447 0.68 0.475313
Target:  5'- -gGCGAGgucguucaGGCugcGCCAGUcgcUGCCGGc -3'
miRNA:   3'- ugCGCUUaug-----CCGu--CGGUCA---ACGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.