Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11975 | 5' | -55.4 | NC_003278.1 | + | 1895 | 0.67 | 0.517876 |
Target: 5'- gGCGUaAGUacuacaacaACGGCAGCCAc--GCCGGc -3' miRNA: 3'- -UGCGcUUA---------UGCCGUCGGUcaaCGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 3300 | 0.75 | 0.171414 |
Target: 5'- gAUGCGAu--CGGCGGCCGGcUUGCCc- -3' miRNA: 3'- -UGCGCUuauGCCGUCGGUC-AACGGcc -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 5128 | 0.67 | 0.517876 |
Target: 5'- -gGUGAccuuGUccaACuGGCuGGCCAGUUGCUGGg -3' miRNA: 3'- ugCGCU----UA---UG-CCG-UCGGUCAACGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 5752 | 0.68 | 0.434567 |
Target: 5'- -aGCGggU-UGGCGGCgCGGUUGgUGGu -3' miRNA: 3'- ugCGCuuAuGCCGUCG-GUCAACgGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 8546 | 0.7 | 0.342272 |
Target: 5'- -gGCGAcgAUGGCGuGCCAGaUGCUGa -3' miRNA: 3'- ugCGCUuaUGCCGU-CGGUCaACGGCc -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 8614 | 0.66 | 0.561876 |
Target: 5'- cAUGCGGAUggccucagcAgGGCGGCgAcGUUGCCGcGg -3' miRNA: 3'- -UGCGCUUA---------UgCCGUCGgU-CAACGGC-C- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 9035 | 0.72 | 0.258084 |
Target: 5'- aGCGCGGGgaacUGuGCGGCCAGUUGgUCGGc -3' miRNA: 3'- -UGCGCUUau--GC-CGUCGGUCAAC-GGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 10693 | 0.66 | 0.59553 |
Target: 5'- uGCGcCGAAUACGGCccuGCU---UGCCGc -3' miRNA: 3'- -UGC-GCUUAUGCCGu--CGGucaACGGCc -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 11934 | 0.69 | 0.424699 |
Target: 5'- cCGCGGcgAUGCccaaGGCAGCCA---GCCGGu -3' miRNA: 3'- uGCGCU--UAUG----CCGUCGGUcaaCGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 12422 | 1.11 | 0.000421 |
Target: 5'- gACGCGAAUACGGCAGCCAGUUGCCGGa -3' miRNA: 3'- -UGCGCUUAUGCCGUCGGUCAACGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 13284 | 0.67 | 0.528758 |
Target: 5'- gGCGuCGAcgAUGGcCAGCaGGUccGCCGGg -3' miRNA: 3'- -UGC-GCUuaUGCC-GUCGgUCAa-CGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 14163 | 0.66 | 0.561876 |
Target: 5'- aGCGCuGAucGCGGCgAGCgAG--GCCGGg -3' miRNA: 3'- -UGCG-CUuaUGCCG-UCGgUCaaCGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 16561 | 0.7 | 0.368426 |
Target: 5'- -gGCGAggAUGGaCAGCCGGUcGCCa- -3' miRNA: 3'- ugCGCUuaUGCC-GUCGGUCAaCGGcc -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 16877 | 0.67 | 0.507084 |
Target: 5'- cUGCGAAgAgGGCuucgAGCCAGUccggugcgGCCGGc -3' miRNA: 3'- uGCGCUUaUgCCG----UCGGUCAa-------CGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 16895 | 0.67 | 0.507084 |
Target: 5'- cGCGCGc--GCGGCAGCCuGUgcagUGUCa- -3' miRNA: 3'- -UGCGCuuaUGCCGUCGGuCA----ACGGcc -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 17422 | 0.7 | 0.368426 |
Target: 5'- gGCGaUGAGUGCGGUAGCgAccgGCUGGg -3' miRNA: 3'- -UGC-GCUUAUGCCGUCGgUcaaCGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 17449 | 0.66 | 0.573045 |
Target: 5'- -aGCGAa---GGC-GCgCAGUUGCUGGg -3' miRNA: 3'- ugCGCUuaugCCGuCG-GUCAACGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 19501 | 0.75 | 0.166673 |
Target: 5'- cGCGCGggUgggguugccgGCGGCGGCCAucUGCUGa -3' miRNA: 3'- -UGCGCuuA----------UGCCGUCGGUcaACGGCc -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 19813 | 0.67 | 0.507084 |
Target: 5'- uCGCGcGUGCcGCcauGCCGG-UGCCGGc -3' miRNA: 3'- uGCGCuUAUGcCGu--CGGUCaACGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 20090 | 0.68 | 0.485797 |
Target: 5'- uCGCcc--GCGGCuGCCAGguugagcaUGCCGGg -3' miRNA: 3'- uGCGcuuaUGCCGuCGGUCa-------ACGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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