miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11975 5' -55.4 NC_003278.1 + 12422 1.11 0.000421
Target:  5'- gACGCGAAUACGGCAGCCAGUUGCCGGa -3'
miRNA:   3'- -UGCGCUUAUGCCGUCGGUCAACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 31228 0.66 0.584266
Target:  5'- cUGCGAGUGCuGCA-UCAGUUGUCaGGa -3'
miRNA:   3'- uGCGCUUAUGcCGUcGGUCAACGG-CC- -5'
11975 5' -55.4 NC_003278.1 + 14163 0.66 0.561876
Target:  5'- aGCGCuGAucGCGGCgAGCgAG--GCCGGg -3'
miRNA:   3'- -UGCG-CUuaUGCCG-UCGgUCaaCGGCC- -5'
11975 5' -55.4 NC_003278.1 + 20523 0.66 0.550766
Target:  5'- uGCGCGccgucgAgGGCGGCCAGUU-CCa- -3'
miRNA:   3'- -UGCGCuua---UgCCGUCGGUCAAcGGcc -5'
11975 5' -55.4 NC_003278.1 + 30824 0.67 0.522218
Target:  5'- aGCGCGAcaGCGGCcagagcggcgugaucGGUCGGUuccUGCuCGGc -3'
miRNA:   3'- -UGCGCUuaUGCCG---------------UCGGUCA---ACG-GCC- -5'
11975 5' -55.4 NC_003278.1 + 16895 0.67 0.507084
Target:  5'- cGCGCGc--GCGGCAGCCuGUgcagUGUCa- -3'
miRNA:   3'- -UGCGCuuaUGCCGUCGGuCA----ACGGcc -5'
11975 5' -55.4 NC_003278.1 + 22049 0.67 0.503865
Target:  5'- gACGCGAucacccugcccggcGUGCuGCuGCCGGagcugGCCGGc -3'
miRNA:   3'- -UGCGCU--------------UAUGcCGuCGGUCaa---CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 23228 0.67 0.496389
Target:  5'- cACGCucagcUACGcGCucGCCAGggGCCGGc -3'
miRNA:   3'- -UGCGcuu--AUGC-CGu-CGGUCaaCGGCC- -5'
11975 5' -55.4 NC_003278.1 + 22736 0.68 0.485797
Target:  5'- aGCGCGAacgcaGUugGaGCAGCCcgaAGacGCUGGg -3'
miRNA:   3'- -UGCGCU-----UAugC-CGUCGG---UCaaCGGCC- -5'
11975 5' -55.4 NC_003278.1 + 33184 0.68 0.485797
Target:  5'- gGCGCGAgcggaucggcaAUGCGGUuccGCCGGcugcgGCCGa -3'
miRNA:   3'- -UGCGCU-----------UAUGCCGu--CGGUCaa---CGGCc -5'
11975 5' -55.4 NC_003278.1 + 3300 0.75 0.171414
Target:  5'- gAUGCGAu--CGGCGGCCGGcUUGCCc- -3'
miRNA:   3'- -UGCGCUuauGCCGUCGGUC-AACGGcc -5'
11975 5' -55.4 NC_003278.1 + 16561 0.7 0.368426
Target:  5'- -gGCGAggAUGGaCAGCCGGUcGCCa- -3'
miRNA:   3'- ugCGCUuaUGCC-GUCGGUCAaCGGcc -5'
11975 5' -55.4 NC_003278.1 + 20224 0.7 0.368426
Target:  5'- cCGCGAGUACGGCcagAGCCuGgaGaCGGu -3'
miRNA:   3'- uGCGCUUAUGCCG---UCGGuCaaCgGCC- -5'
11975 5' -55.4 NC_003278.1 + 22406 0.69 0.386608
Target:  5'- aGCGCGAcgcCGGCuauCCGG-UGCCGGu -3'
miRNA:   3'- -UGCGCUuauGCCGuc-GGUCaACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 26454 0.69 0.386608
Target:  5'- -gGCGAAgcccacCGcGCAGCCGuGUUGCuCGGg -3'
miRNA:   3'- ugCGCUUau----GC-CGUCGGU-CAACG-GCC- -5'
11975 5' -55.4 NC_003278.1 + 22900 0.69 0.405372
Target:  5'- -gGCGAggacuucgAUGCGGUGGCCAccGUgaaaGCCGGc -3'
miRNA:   3'- ugCGCU--------UAUGCCGUCGGU--CAa---CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 29888 0.68 0.485797
Target:  5'- uCGCGcGUugGGCgugaccGGCCAGaagaccGCCGGc -3'
miRNA:   3'- uGCGCuUAugCCG------UCGGUCaa----CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 27287 0.79 0.091047
Target:  5'- cCGCGAGgucGCGGCGuGCCAGUUGaCGGg -3'
miRNA:   3'- uGCGCUUa--UGCCGU-CGGUCAACgGCC- -5'
11975 5' -55.4 NC_003278.1 + 33154 0.66 0.605695
Target:  5'- -gGCGAGUuccagggugguaaACGGCcuguGCCAGgUGCCa- -3'
miRNA:   3'- ugCGCUUA-------------UGCCGu---CGGUCaACGGcc -5'
11975 5' -55.4 NC_003278.1 + 10693 0.66 0.59553
Target:  5'- uGCGcCGAAUACGGCccuGCU---UGCCGc -3'
miRNA:   3'- -UGC-GCUUAUGCCGu--CGGucaACGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.