miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11975 5' -55.4 NC_003278.1 + 12422 1.11 0.000421
Target:  5'- gACGCGAAUACGGCAGCCAGUUGCCGGa -3'
miRNA:   3'- -UGCGCUUAUGCCGUCGGUCAACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 27287 0.79 0.091047
Target:  5'- cCGCGAGgucGCGGCGuGCCAGUUGaCGGg -3'
miRNA:   3'- uGCGCUUa--UGCCGU-CGGUCAACgGCC- -5'
11975 5' -55.4 NC_003278.1 + 19501 0.75 0.166673
Target:  5'- cGCGCGggUgggguugccgGCGGCGGCCAucUGCUGa -3'
miRNA:   3'- -UGCGCuuA----------UGCCGUCGGUcaACGGCc -5'
11975 5' -55.4 NC_003278.1 + 3300 0.75 0.171414
Target:  5'- gAUGCGAu--CGGCGGCCGGcUUGCCc- -3'
miRNA:   3'- -UGCGCUuauGCCGUCGGUC-AACGGcc -5'
11975 5' -55.4 NC_003278.1 + 9035 0.72 0.258084
Target:  5'- aGCGCGGGgaacUGuGCGGCCAGUUGgUCGGc -3'
miRNA:   3'- -UGCGCUUau--GC-CGUCGGUCAAC-GGCC- -5'
11975 5' -55.4 NC_003278.1 + 8546 0.7 0.342272
Target:  5'- -gGCGAcgAUGGCGuGCCAGaUGCUGa -3'
miRNA:   3'- ugCGCUuaUGCCGU-CGGUCaACGGCc -5'
11975 5' -55.4 NC_003278.1 + 17422 0.7 0.368426
Target:  5'- gGCGaUGAGUGCGGUAGCgAccgGCUGGg -3'
miRNA:   3'- -UGC-GCUUAUGCCGUCGgUcaaCGGCC- -5'
11975 5' -55.4 NC_003278.1 + 16561 0.7 0.368426
Target:  5'- -gGCGAggAUGGaCAGCCGGUcGCCa- -3'
miRNA:   3'- ugCGCUuaUGCC-GUCGGUCAaCGGcc -5'
11975 5' -55.4 NC_003278.1 + 20224 0.7 0.368426
Target:  5'- cCGCGAGUACGGCcagAGCCuGgaGaCGGu -3'
miRNA:   3'- uGCGCUUAUGCCG---UCGGuCaaCgGCC- -5'
11975 5' -55.4 NC_003278.1 + 22406 0.69 0.386608
Target:  5'- aGCGCGAcgcCGGCuauCCGG-UGCCGGu -3'
miRNA:   3'- -UGCGCUuauGCCGuc-GGUCaACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 26454 0.69 0.386608
Target:  5'- -gGCGAAgcccacCGcGCAGCCGuGUUGCuCGGg -3'
miRNA:   3'- ugCGCUUau----GC-CGUCGGU-CAACG-GCC- -5'
11975 5' -55.4 NC_003278.1 + 20747 0.69 0.395919
Target:  5'- -gGCGAGcuCGcGCAGCCAGggGCUGu -3'
miRNA:   3'- ugCGCUUauGC-CGUCGGUCaaCGGCc -5'
11975 5' -55.4 NC_003278.1 + 22900 0.69 0.405372
Target:  5'- -gGCGAggacuucgAUGCGGUGGCCAccGUgaaaGCCGGc -3'
miRNA:   3'- ugCGCU--------UAUGCCGUCGGU--CAa---CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 11934 0.69 0.424699
Target:  5'- cCGCGGcgAUGCccaaGGCAGCCA---GCCGGu -3'
miRNA:   3'- uGCGCU--UAUG----CCGUCGGUcaaCGGCC- -5'
11975 5' -55.4 NC_003278.1 + 5752 0.68 0.434567
Target:  5'- -aGCGggU-UGGCGGCgCGGUUGgUGGu -3'
miRNA:   3'- ugCGCuuAuGCCGUCG-GUCAACgGCC- -5'
11975 5' -55.4 NC_003278.1 + 23048 0.68 0.475313
Target:  5'- -gGCGGgugagguugauGUGCGGCAgcGCCAGgccGCUGGc -3'
miRNA:   3'- ugCGCU-----------UAUGCCGU--CGGUCaa-CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 32447 0.68 0.475313
Target:  5'- -gGCGAGgucguucaGGCugcGCCAGUcgcUGCCGGc -3'
miRNA:   3'- ugCGCUUaug-----CCGu--CGGUCA---ACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 33184 0.68 0.485797
Target:  5'- gGCGCGAgcggaucggcaAUGCGGUuccGCCGGcugcgGCCGa -3'
miRNA:   3'- -UGCGCU-----------UAUGCCGu--CGGUCaa---CGGCc -5'
11975 5' -55.4 NC_003278.1 + 29888 0.68 0.485797
Target:  5'- uCGCGcGUugGGCgugaccGGCCAGaagaccGCCGGc -3'
miRNA:   3'- uGCGCuUAugCCG------UCGGUCaa----CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 22736 0.68 0.485797
Target:  5'- aGCGCGAacgcaGUugGaGCAGCCcgaAGacGCUGGg -3'
miRNA:   3'- -UGCGCU-----UAugC-CGUCGG---UCaaCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.