miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11989 3' -58.3 NC_003278.1 + 18896 0.71 0.230932
Target:  5'- uCGACCuGCUgcAGUUCGAUGugGCCG-CGa -3'
miRNA:   3'- -GCUGG-CGG--UCGAGCUGCugUGGCuGC- -5'
11989 3' -58.3 NC_003278.1 + 19739 0.71 0.230932
Target:  5'- -cGCUGCCGcGCUgGcCGGCACCGGCa -3'
miRNA:   3'- gcUGGCGGU-CGAgCuGCUGUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 20084 0.71 0.243225
Target:  5'- gCGGCUGCCAGgUUGAgcaugccgggcaUGGCGCCGAgGa -3'
miRNA:   3'- -GCUGGCGGUCgAGCU------------GCUGUGGCUgC- -5'
11989 3' -58.3 NC_003278.1 + 9016 0.71 0.249573
Target:  5'- gGGCgGCUAuGC-CGGCGGCACCGcCGa -3'
miRNA:   3'- gCUGgCGGU-CGaGCUGCUGUGGCuGC- -5'
11989 3' -58.3 NC_003278.1 + 14402 0.7 0.256057
Target:  5'- aGAUCGgC--CUCGAgGACGCCGACGg -3'
miRNA:   3'- gCUGGCgGucGAGCUgCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 14276 0.7 0.262678
Target:  5'- gGGCgCGCC-GC-CGGCGuCACCGAUGa -3'
miRNA:   3'- gCUG-GCGGuCGaGCUGCuGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 6603 0.7 0.276338
Target:  5'- aGGgCGCCGGCguaaUCGcCGGCAUCGAUGc -3'
miRNA:   3'- gCUgGCGGUCG----AGCuGCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 30331 0.7 0.283377
Target:  5'- gGAgCGCCAGgaCGcCGucaACGCCGACGc -3'
miRNA:   3'- gCUgGCGGUCgaGCuGC---UGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 33204 0.7 0.283377
Target:  5'- gCGGuuCCGCCGGCUgCGGcCGAggccauCGCCGGCGu -3'
miRNA:   3'- -GCU--GGCGGUCGA-GCU-GCU------GUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 29315 0.69 0.290558
Target:  5'- -cGCUGCCGGUgaaGAUcGCACCGGCGg -3'
miRNA:   3'- gcUGGCGGUCGag-CUGcUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 5925 0.69 0.290558
Target:  5'- uCGGCCGCgAGCUgGuccACGACAaguacuucCCGAUGg -3'
miRNA:   3'- -GCUGGCGgUCGAgC---UGCUGU--------GGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 18039 0.69 0.290558
Target:  5'- -uGCCGCC-GCUCGAgGAC-CUGACc -3'
miRNA:   3'- gcUGGCGGuCGAGCUgCUGuGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 22486 0.69 0.297881
Target:  5'- uCGACCGUgAGC-CGGa-ACACCGGCa -3'
miRNA:   3'- -GCUGGCGgUCGaGCUgcUGUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 9098 0.69 0.305346
Target:  5'- gCGuuCGCCAggcgcugguGCUCGGCGGugcCGCCGGCa -3'
miRNA:   3'- -GCugGCGGU---------CGAGCUGCU---GUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 29809 0.69 0.312954
Target:  5'- cCGACCGCagcgacaaCAGCcgcgcCGGCGGCGCCGcCa -3'
miRNA:   3'- -GCUGGCG--------GUCGa----GCUGCUGUGGCuGc -5'
11989 3' -58.3 NC_003278.1 + 2221 0.69 0.312954
Target:  5'- cCGACUGCagauaaacGCUCGACccCACCGACu -3'
miRNA:   3'- -GCUGGCGgu------CGAGCUGcuGUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 12402 0.69 0.312954
Target:  5'- uGugUGCCaAGCgggCGAgGGCGCCGcCGg -3'
miRNA:   3'- gCugGCGG-UCGa--GCUgCUGUGGCuGC- -5'
11989 3' -58.3 NC_003278.1 + 21308 0.69 0.316037
Target:  5'- -cGCCGgCAGgUCGAUgcccagguagcccagGACGCCGGCGa -3'
miRNA:   3'- gcUGGCgGUCgAGCUG---------------CUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 5649 0.69 0.320705
Target:  5'- uCGACCGCCugaugaucGGCUUcaACGGCACCaGCGc -3'
miRNA:   3'- -GCUGGCGG--------UCGAGc-UGCUGUGGcUGC- -5'
11989 3' -58.3 NC_003278.1 + 29914 0.69 0.328598
Target:  5'- aGACCGCCGGCa--ACGAgACCuACGa -3'
miRNA:   3'- gCUGGCGGUCGagcUGCUgUGGcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.