miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12013 5' -61.8 NC_003278.1 + 10506 0.66 0.289149
Target:  5'- uCCAGAGCcucgAGGCUGUcaGCCauugGCCggGCGCc -3'
miRNA:   3'- -GGUCUCG----UUCGGCG--CGG----CGGa-CGCGa -5'
12013 5' -61.8 NC_003278.1 + 10498 0.66 0.289149
Target:  5'- cCCucGAGcCAGGCCcucGUGCUGCCcucGCGCg -3'
miRNA:   3'- -GGu-CUC-GUUCGG---CGCGGCGGa--CGCGa -5'
12013 5' -61.8 NC_003278.1 + 1561 0.66 0.281991
Target:  5'- gUCuGGGCAAGCuuggaacuCGCGCCaaugcagacgcGCCUGCaGCa -3'
miRNA:   3'- -GGuCUCGUUCG--------GCGCGG-----------CGGACG-CGa -5'
12013 5' -61.8 NC_003278.1 + 30904 0.66 0.277764
Target:  5'- gCC-GAGCAGgaaccgaccgaucacGCCGCucugGCCGCUgucGCGCUg -3'
miRNA:   3'- -GGuCUCGUU---------------CGGCG----CGGCGGa--CGCGA- -5'
12013 5' -61.8 NC_003278.1 + 14273 0.66 0.274974
Target:  5'- cUCAGAcCAAGCUGauUCGCCaGCGCUa -3'
miRNA:   3'- -GGUCUcGUUCGGCgcGGCGGaCGCGA- -5'
12013 5' -61.8 NC_003278.1 + 30899 0.66 0.27428
Target:  5'- aCCucacCGAGCUGCGCgGCCUcgacccaGCGCUg -3'
miRNA:   3'- -GGucucGUUCGGCGCGgCGGA-------CGCGA- -5'
12013 5' -61.8 NC_003278.1 + 16816 0.66 0.272896
Target:  5'- aCCGGAcuccgGCcAGUCGCGCaguuggcggcgguaCGCCUGCaGCg -3'
miRNA:   3'- -GGUCU-----CGuUCGGCGCG--------------GCGGACG-CGa -5'
12013 5' -61.8 NC_003278.1 + 14913 0.66 0.26136
Target:  5'- gCCGGuAGUAgcccGGCCGCGUucaGCCUGagcaGCUu -3'
miRNA:   3'- -GGUC-UCGU----UCGGCGCGg--CGGACg---CGA- -5'
12013 5' -61.8 NC_003278.1 + 13259 0.66 0.26136
Target:  5'- gCCGGGGCGcuGCCGUugcccuggGCgGCCUGCa-- -3'
miRNA:   3'- -GGUCUCGUu-CGGCG--------CGgCGGACGcga -5'
12013 5' -61.8 NC_003278.1 + 31024 0.66 0.260694
Target:  5'- aCCuGAGCAagcgcugGGCCGCaGCgaCGCUUGCaGCa -3'
miRNA:   3'- -GGuCUCGU-------UCGGCG-CG--GCGGACG-CGa -5'
12013 5' -61.8 NC_003278.1 + 2022 0.66 0.260029
Target:  5'- uCCAGAucggugccgcggcGCAuguacuuGGCCaGCGgCGCCUGCaGCg -3'
miRNA:   3'- -GGUCU-------------CGU-------UCGG-CGCgGCGGACG-CGa -5'
12013 5' -61.8 NC_003278.1 + 31626 0.66 0.257384
Target:  5'- gCCuGGGC-GGCgGCGCCGCaggcuucaaccggGCGCg -3'
miRNA:   3'- -GGuCUCGuUCGgCGCGGCGga-----------CGCGa -5'
12013 5' -61.8 NC_003278.1 + 22824 0.66 0.254761
Target:  5'- gCCGGcgcuGGCGGGCC-UGCCGauCCUGCaGCUg -3'
miRNA:   3'- -GGUC----UCGUUCGGcGCGGC--GGACG-CGA- -5'
12013 5' -61.8 NC_003278.1 + 31692 0.66 0.254761
Target:  5'- cCCGGuugaAGCcuGCgGCGCCGCCgcccagGcCGCa -3'
miRNA:   3'- -GGUC----UCGuuCGgCGCGGCGGa-----C-GCGa -5'
12013 5' -61.8 NC_003278.1 + 27182 0.66 0.254761
Target:  5'- -gGGAGCcggugaAGGUgGCGCCGCagaGCGCg -3'
miRNA:   3'- ggUCUCG------UUCGgCGCGGCGga-CGCGa -5'
12013 5' -61.8 NC_003278.1 + 14295 0.67 0.241974
Target:  5'- -uGGGGUcAGCCgucucgccgggcGCGCCGCCgGCGUc -3'
miRNA:   3'- ggUCUCGuUCGG------------CGCGGCGGaCGCGa -5'
12013 5' -61.8 NC_003278.1 + 20753 0.67 0.241974
Target:  5'- gUCGGcGGCGAGCuCGCGCaGCCagGgGCUg -3'
miRNA:   3'- -GGUC-UCGUUCG-GCGCGgCGGa-CgCGA- -5'
12013 5' -61.8 NC_003278.1 + 7969 0.67 0.241349
Target:  5'- aCCAccGCcacGGCCGCGCCaucaugggccucgGCCUGgGCg -3'
miRNA:   3'- -GGUcuCGu--UCGGCGCGG-------------CGGACgCGa -5'
12013 5' -61.8 NC_003278.1 + 30233 0.67 0.235784
Target:  5'- uUCAGAGCGcGCaGCGUCGCgCUGUGa- -3'
miRNA:   3'- -GGUCUCGUuCGgCGCGGCG-GACGCga -5'
12013 5' -61.8 NC_003278.1 + 5549 0.67 0.235784
Target:  5'- gCGGA-CAcGUCGCGCgGCUUGCGUa -3'
miRNA:   3'- gGUCUcGUuCGGCGCGgCGGACGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.