miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12019 5' -54.8 NC_003278.1 + 2345 0.72 0.300476
Target:  5'- aGUGCUGGcCGAacgGGCggUGGUACgAGCCg -3'
miRNA:   3'- cCGCGACUaGCUa--CCG--ACCAUG-UCGG- -5'
12019 5' -54.8 NC_003278.1 + 2547 0.66 0.595152
Target:  5'- aGGC-CaGAUCGGcgUGGCcGGUguugucguuGCGGCCg -3'
miRNA:   3'- -CCGcGaCUAGCU--ACCGaCCA---------UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 3731 0.75 0.201204
Target:  5'- aGGCGCUGAUCGAcGcGCUGGaaacGgGGCg -3'
miRNA:   3'- -CCGCGACUAGCUaC-CGACCa---UgUCGg -5'
12019 5' -54.8 NC_003278.1 + 4302 0.66 0.583842
Target:  5'- cGGCGCuacUGAggggCGA-GGgUGGgcgGCAGCa -3'
miRNA:   3'- -CCGCG---ACUa---GCUaCCgACCa--UGUCGg -5'
12019 5' -54.8 NC_003278.1 + 4838 0.69 0.437594
Target:  5'- uGGCGCUGAaggagagcgccUCGGUacccaGGCUGGcgggggagucggugAUGGCCa -3'
miRNA:   3'- -CCGCGACU-----------AGCUA-----CCGACCa-------------UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 5742 0.72 0.270757
Target:  5'- cGGCGC-GGUUGGUGGUagccgcggcgcUGGUGCcguugaAGCCg -3'
miRNA:   3'- -CCGCGaCUAGCUACCG-----------ACCAUG------UCGG- -5'
12019 5' -54.8 NC_003278.1 + 6778 0.67 0.56136
Target:  5'- cGGC-CUGGUCGGUGaGCaggagGGUGCGauGCa -3'
miRNA:   3'- -CCGcGACUAGCUAC-CGa----CCAUGU--CGg -5'
12019 5' -54.8 NC_003278.1 + 8024 0.68 0.495623
Target:  5'- uGGCGCcggccgUGG-CGGUGGUggugaGGU-CAGCCa -3'
miRNA:   3'- -CCGCG------ACUaGCUACCGa----CCAuGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 8249 0.67 0.569205
Target:  5'- gGGCGCaGA-CGAaGGCagagaaagccagguUGGU-CAGCCa -3'
miRNA:   3'- -CCGCGaCUaGCUaCCG--------------ACCAuGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 9089 0.71 0.349664
Target:  5'- aGGCGCUGGUgcucGGC-GGUGCcGCCg -3'
miRNA:   3'- -CCGCGACUAgcuaCCGaCCAUGuCGG- -5'
12019 5' -54.8 NC_003278.1 + 9771 0.71 0.325197
Target:  5'- gGGCGCUGuugcagccggCGAgcaacaucaggcagaGGCUGGU-CAGCCc -3'
miRNA:   3'- -CCGCGACua--------GCUa--------------CCGACCAuGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 13724 0.69 0.443627
Target:  5'- gGGCGUUcuccGUCGAUcGCUGGgACAGCa -3'
miRNA:   3'- -CCGCGAc---UAGCUAcCGACCaUGUCGg -5'
12019 5' -54.8 NC_003278.1 + 14163 0.69 0.433598
Target:  5'- aGCGCUGAUCGcggcgagcgaGGCcGGgaagaagugGCAGCCc -3'
miRNA:   3'- cCGCGACUAGCua--------CCGaCCa--------UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 14334 0.66 0.640628
Target:  5'- aGCGCUGG-CGAaucaGCuUGGUcugaGCGGCCg -3'
miRNA:   3'- cCGCGACUaGCUac--CG-ACCA----UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 14346 0.82 0.063075
Target:  5'- cGUGCUGGUCGccGaGCUGGUACuGCCg -3'
miRNA:   3'- cCGCGACUAGCuaC-CGACCAUGuCGG- -5'
12019 5' -54.8 NC_003278.1 + 15343 0.69 0.413941
Target:  5'- aGGgGCUGGUuacCGGUGGC-GGU--GGCCu -3'
miRNA:   3'- -CCgCGACUA---GCUACCGaCCAugUCGG- -5'
12019 5' -54.8 NC_003278.1 + 15480 0.66 0.582713
Target:  5'- aGCGUUGAucccaacUCGGUGGUcauuccgcUGGUACuGaCCa -3'
miRNA:   3'- cCGCGACU-------AGCUACCG--------ACCAUGuC-GG- -5'
12019 5' -54.8 NC_003278.1 + 16542 0.66 0.606496
Target:  5'- gGGacuGUUGAUCGucgcUGGCgaggaUGG-ACAGCCg -3'
miRNA:   3'- -CCg--CGACUAGCu---ACCG-----ACCaUGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 17444 0.69 0.443627
Target:  5'- aGGCGCgcaguugcUGggCGAUGGCgaUGaGUGCGGUa -3'
miRNA:   3'- -CCGCG--------ACuaGCUACCG--AC-CAUGUCGg -5'
12019 5' -54.8 NC_003278.1 + 20808 0.68 0.474474
Target:  5'- cGGCGCUGA----UGGCUaccGUugGCAGCCu -3'
miRNA:   3'- -CCGCGACUagcuACCGAc--CA--UGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.