miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12019 5' -54.8 NC_003278.1 + 28262 1.15 0.000248
Target:  5'- uGGCGCUGAUCGAUGGCUGGUACAGCCa -3'
miRNA:   3'- -CCGCGACUAGCUACCGACCAUGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 20964 0.66 0.629244
Target:  5'- cGGCcuGUUGAUCGGcccGCUGGUGaccGCCc -3'
miRNA:   3'- -CCG--CGACUAGCUac-CGACCAUgu-CGG- -5'
12019 5' -54.8 NC_003278.1 + 33183 0.66 0.617864
Target:  5'- uGGCGCgagcgGAUCGGcaaugcGGUUccgccGGcUGCGGCCg -3'
miRNA:   3'- -CCGCGa----CUAGCUa-----CCGA-----CC-AUGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 27764 0.66 0.617864
Target:  5'- --gGCUGAgaaguaccugCucUGGCUGGU-CAGCCa -3'
miRNA:   3'- ccgCGACUa---------GcuACCGACCAuGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 16542 0.66 0.606496
Target:  5'- gGGacuGUUGAUCGucgcUGGCgaggaUGG-ACAGCCg -3'
miRNA:   3'- -CCg--CGACUAGCu---ACCG-----ACCaUGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 2547 0.66 0.595152
Target:  5'- aGGC-CaGAUCGGcgUGGCcGGUguugucguuGCGGCCg -3'
miRNA:   3'- -CCGcGaCUAGCU--ACCGaCCA---------UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 15480 0.66 0.582713
Target:  5'- aGCGUUGAucccaacUCGGUGGUcauuccgcUGGUACuGaCCa -3'
miRNA:   3'- cCGCGACU-------AGCUACCG--------ACCAUGuC-GG- -5'
12019 5' -54.8 NC_003278.1 + 21657 0.68 0.517189
Target:  5'- cGGCGCc-AUCGGUGccCUGGUGCucggcGCCa -3'
miRNA:   3'- -CCGCGacUAGCUACc-GACCAUGu----CGG- -5'
12019 5' -54.8 NC_003278.1 + 21288 0.68 0.517189
Target:  5'- cGGCaacaUGAUCGuccagGGcCUGGUgaACGGCCu -3'
miRNA:   3'- -CCGcg--ACUAGCua---CC-GACCA--UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 26883 0.68 0.493488
Target:  5'- aGGCGCUGcgCGAUGGagagaucgACgaGGCCg -3'
miRNA:   3'- -CCGCGACuaGCUACCgacca---UG--UCGG- -5'
12019 5' -54.8 NC_003278.1 + 14346 0.82 0.063075
Target:  5'- cGUGCUGGUCGccGaGCUGGUACuGCCg -3'
miRNA:   3'- cCGCGACUAGCuaC-CGACCAUGuCGG- -5'
12019 5' -54.8 NC_003278.1 + 30243 0.71 0.349664
Target:  5'- uGGCcCUGGUCGAcgcgcUGcGcCUGGUGguGCCg -3'
miRNA:   3'- -CCGcGACUAGCU-----AC-C-GACCAUguCGG- -5'
12019 5' -54.8 NC_003278.1 + 23294 0.7 0.358399
Target:  5'- aGGCGUgaagacggaGAUCGAUGcgaucauCUGGUACGGCg -3'
miRNA:   3'- -CCGCGa--------CUAGCUACc------GACCAUGUCGg -5'
12019 5' -54.8 NC_003278.1 + 15343 0.69 0.413941
Target:  5'- aGGgGCUGGUuacCGGUGGC-GGU--GGCCu -3'
miRNA:   3'- -CCgCGACUA---GCUACCGaCCAugUCGG- -5'
12019 5' -54.8 NC_003278.1 + 14163 0.69 0.433598
Target:  5'- aGCGCUGAUCGcggcgagcgaGGCcGGgaagaagugGCAGCCc -3'
miRNA:   3'- cCGCGACUAGCua--------CCGaCCa--------UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 13724 0.69 0.443627
Target:  5'- gGGCGUUcuccGUCGAUcGCUGGgACAGCa -3'
miRNA:   3'- -CCGCGAc---UAGCUAcCGACCaUGUCGg -5'
12019 5' -54.8 NC_003278.1 + 20808 0.68 0.474474
Target:  5'- cGGCGCUGA----UGGCUaccGUugGCAGCCu -3'
miRNA:   3'- -CCGCGACUagcuACCGAc--CA--UGUCGG- -5'
12019 5' -54.8 NC_003278.1 + 3731 0.75 0.201204
Target:  5'- aGGCGCUGAUCGAcGcGCUGGaaacGgGGCg -3'
miRNA:   3'- -CCGCGACUAGCUaC-CGACCa---UgUCGg -5'
12019 5' -54.8 NC_003278.1 + 28835 0.66 0.595152
Target:  5'- cGGcCGCgucAUCGAUGaacauccagcGCUGGUGCAgGUCg -3'
miRNA:   3'- -CC-GCGac-UAGCUAC----------CGACCAUGU-CGG- -5'
12019 5' -54.8 NC_003278.1 + 4302 0.66 0.583842
Target:  5'- cGGCGCuacUGAggggCGA-GGgUGGgcgGCAGCa -3'
miRNA:   3'- -CCGCG---ACUa---GCUaCCgACCa--UGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.