Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12020 | 3' | -47.8 | NC_003278.1 | + | 16621 | 0.69 | 0.860916 |
Target: 5'- aCGAUCGagcg--CGAUUGGcGCGACCg -3' miRNA: 3'- -GUUGGCguuuaaGCUGACCuUGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 17024 | 0.66 | 0.950232 |
Target: 5'- -cACCGCGAucaUCGGCcUGGuAGCcACCg -3' miRNA: 3'- guUGGCGUUua-AGCUG-ACC-UUGcUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 18290 | 0.68 | 0.894005 |
Target: 5'- --uCCGCGGGggCGGCauGAACGGCCc -3' miRNA: 3'- guuGGCGUUUaaGCUGacCUUGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 18342 | 0.74 | 0.585508 |
Target: 5'- uGACgGCAuccAGUUCGAgUGGAcccucgGCGGCCu -3' miRNA: 3'- gUUGgCGU---UUAAGCUgACCU------UGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 18863 | 0.68 | 0.886178 |
Target: 5'- -cGCCGCGcuugaUCGGCUGGucgaggggGACGACg -3' miRNA: 3'- guUGGCGUuua--AGCUGACC--------UUGCUGg -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 18902 | 0.69 | 0.860916 |
Target: 5'- -uGCUGC-AGUUCGAUgUGGccGCGACCa -3' miRNA: 3'- guUGGCGuUUAAGCUG-ACCu-UGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 19247 | 0.66 | 0.945258 |
Target: 5'- gCAGCUGCAGGUcauucgccaUCGGC-GGAACu-CCg -3' miRNA: 3'- -GUUGGCGUUUA---------AGCUGaCCUUGcuGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 20042 | 0.72 | 0.69191 |
Target: 5'- gCAGCCGCGGg--CGACaUGGAccucgGCGACa -3' miRNA: 3'- -GUUGGCGUUuaaGCUG-ACCU-----UGCUGg -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 20220 | 0.67 | 0.914944 |
Target: 5'- uCGGCCGCGAGUaCGGCcagagccUGGAgACGgucACCa -3' miRNA: 3'- -GUUGGCGUUUAaGCUG-------ACCU-UGC---UGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 20797 | 0.66 | 0.96331 |
Target: 5'- -cGCCGCGuuUUCGGCgcuGAUGGCUa -3' miRNA: 3'- guUGGCGUuuAAGCUGaccUUGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 21081 | 0.67 | 0.928437 |
Target: 5'- -cGCCGCGuaccuGAUcuaUCGcaACUGGGACG-CCg -3' miRNA: 3'- guUGGCGU-----UUA---AGC--UGACCUUGCuGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 21372 | 0.7 | 0.803198 |
Target: 5'- -cGCCGCGA--UCGACUGGuucAAgGACa -3' miRNA: 3'- guUGGCGUUuaAGCUGACC---UUgCUGg -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 21615 | 0.67 | 0.926596 |
Target: 5'- cCAGCCGCugcuggccauGCUGG-GCGACCu -3' miRNA: 3'- -GUUGGCGuuuaagc---UGACCuUGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 22217 | 0.66 | 0.954441 |
Target: 5'- aGGCCGUAGAUgcguccggugcccUCGACcaUGGGccaGGCCg -3' miRNA: 3'- gUUGGCGUUUA-------------AGCUG--ACCUug-CUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 28037 | 0.66 | 0.96331 |
Target: 5'- aCAugCGCAAGggCGAgUGcccGACGugCg -3' miRNA: 3'- -GUugGCGUUUaaGCUgACc--UUGCugG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 28739 | 1.14 | 0.00198 |
Target: 5'- aCAACCGCAAAUUCGACUGGAACGACCu -3' miRNA: 3'- -GUUGGCGUUUAAGCUGACCUUGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 29840 | 0.78 | 0.369981 |
Target: 5'- -cGCCGcCAAGUccuUCGACUGGGACGAg- -3' miRNA: 3'- guUGGC-GUUUA---AGCUGACCUUGCUgg -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 30459 | 0.67 | 0.93997 |
Target: 5'- uCAACCucaaCGAGUUCGugaaGCUGGccgcCGACCa -3' miRNA: 3'- -GUUGGc---GUUUAAGC----UGACCuu--GCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 30873 | 0.7 | 0.823403 |
Target: 5'- uGGCCGCug--UCGcGCUGG-GCGAUCg -3' miRNA: 3'- gUUGGCGuuuaAGC-UGACCuUGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 31561 | 0.69 | 0.869626 |
Target: 5'- aCAGCCuuggccuguugGCGAAUUCGGCUGcAGCGuugguguuuGCCg -3' miRNA: 3'- -GUUGG-----------CGUUUAAGCUGACcUUGC---------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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