Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12020 | 3' | -47.8 | NC_003278.1 | + | 2721 | 0.79 | 0.325098 |
Target: 5'- aCGGCCGCcucGAAUUCGacgccgGCUGGAcCGACCu -3' miRNA: 3'- -GUUGGCG---UUUAAGC------UGACCUuGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 2963 | 0.75 | 0.538878 |
Target: 5'- gGGCgGCAAGUUCcgcguGCUGGAGCG-CCa -3' miRNA: 3'- gUUGgCGUUUAAGc----UGACCUUGCuGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 3047 | 0.69 | 0.869626 |
Target: 5'- uGAUCGcCAGGUgUGGCUGGGcuAUGACCc -3' miRNA: 3'- gUUGGC-GUUUAaGCUGACCU--UGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 4129 | 0.66 | 0.945258 |
Target: 5'- gGACCGCGA---CGGaUGGGACcgGGCCg -3' miRNA: 3'- gUUGGCGUUuaaGCUgACCUUG--CUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 4229 | 0.73 | 0.644718 |
Target: 5'- aCAACCGCcgccaggccAAAUUCcuguACUGGAugGGCUg -3' miRNA: 3'- -GUUGGCG---------UUUAAGc---UGACCUugCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 4406 | 0.71 | 0.760399 |
Target: 5'- --uCCGCAucgccgUCGAa-GGGGCGACCa -3' miRNA: 3'- guuGGCGUuua---AGCUgaCCUUGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 4436 | 0.77 | 0.450103 |
Target: 5'- aCGGCCGCAAcaucgagcgCGACUGGAucgagcagAUGGCCg -3' miRNA: 3'- -GUUGGCGUUuaa------GCUGACCU--------UGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 6515 | 0.7 | 0.803198 |
Target: 5'- -cGCCGgAAAUguaCGGCUGGua-GACCg -3' miRNA: 3'- guUGGCgUUUAa--GCUGACCuugCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 6685 | 0.68 | 0.90873 |
Target: 5'- cCGGCgGCAGuUUCGACcuu-GCGACCu -3' miRNA: 3'- -GUUGgCGUUuAAGCUGaccuUGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 6993 | 0.67 | 0.922188 |
Target: 5'- uCAACCGcCAGAggCGGucaguuucuuCUGGAgccguucgGCGGCCu -3' miRNA: 3'- -GUUGGC-GUUUaaGCU----------GACCU--------UGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 7152 | 0.7 | 0.803198 |
Target: 5'- gGAUCGCuguuGAUgugccCGGCUGGGACcgGGCCg -3' miRNA: 3'- gUUGGCGu---UUAa----GCUGACCUUG--CUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 7225 | 0.66 | 0.955343 |
Target: 5'- uCAACCGCGAGcugCGGgcCUGGcgccuugagaagaucGCGGCCg -3' miRNA: 3'- -GUUGGCGUUUaa-GCU--GACCu--------------UGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 7241 | 0.75 | 0.538878 |
Target: 5'- uGACCGCAAcUUCGaggcgcGCUGGAuCGACg -3' miRNA: 3'- gUUGGCGUUuAAGC------UGACCUuGCUGg -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 7529 | 0.73 | 0.656569 |
Target: 5'- gAGCCaaAGAUcaUCGACUGGAACGAa- -3' miRNA: 3'- gUUGGcgUUUA--AGCUGACCUUGCUgg -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 7711 | 0.66 | 0.96331 |
Target: 5'- gGGCCGUcguccgagacGAGcgCGcCUGGGgaGCGACCg -3' miRNA: 3'- gUUGGCG----------UUUaaGCuGACCU--UGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 7900 | 0.67 | 0.915619 |
Target: 5'- gAACgGCAGAUggUGAaccuaUGGGACuGACCa -3' miRNA: 3'- gUUGgCGUUUAa-GCUg----ACCUUG-CUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 8176 | 0.66 | 0.952133 |
Target: 5'- gUAGCCgacGCAGG-UCGGCaGGAucagcgacagcaggcGCGACCa -3' miRNA: 3'- -GUUGG---CGUUUaAGCUGaCCU---------------UGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 8283 | 0.7 | 0.792776 |
Target: 5'- gCGACCGCcuuga-GGCUgaggGGAAUGACCa -3' miRNA: 3'- -GUUGGCGuuuaagCUGA----CCUUGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 9720 | 0.68 | 0.90873 |
Target: 5'- cCGGCUGCAAcagCGccccgcuaucACcGGAGCGGCCg -3' miRNA: 3'- -GUUGGCGUUuaaGC----------UGaCCUUGCUGG- -5' |
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12020 | 3' | -47.8 | NC_003278.1 | + | 13214 | 0.67 | 0.93997 |
Target: 5'- aCAACgGCAGg--CGAUgGGcuGACGGCCg -3' miRNA: 3'- -GUUGgCGUUuaaGCUGaCC--UUGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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