miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12020 3' -47.8 NC_003278.1 + 21081 0.67 0.928437
Target:  5'- -cGCCGCGuaccuGAUcuaUCGcaACUGGGACG-CCg -3'
miRNA:   3'- guUGGCGU-----UUA---AGC--UGACCUUGCuGG- -5'
12020 3' -47.8 NC_003278.1 + 16621 0.69 0.860916
Target:  5'- aCGAUCGagcg--CGAUUGGcGCGACCg -3'
miRNA:   3'- -GUUGGCguuuaaGCUGACCuUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 33163 0.68 0.886178
Target:  5'- aCGGCCugaGCGAcagCGACUGGcGCGAgCg -3'
miRNA:   3'- -GUUGG---CGUUuaaGCUGACCuUGCUgG- -5'
12020 3' -47.8 NC_003278.1 + 18290 0.68 0.894005
Target:  5'- --uCCGCGGGggCGGCauGAACGGCCc -3'
miRNA:   3'- guuGGCGUUUaaGCUGacCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 6685 0.68 0.90873
Target:  5'- cCGGCgGCAGuUUCGACcuu-GCGACCu -3'
miRNA:   3'- -GUUGgCGUUuAAGCUGaccuUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 9720 0.68 0.90873
Target:  5'- cCGGCUGCAAcagCGccccgcuaucACcGGAGCGGCCg -3'
miRNA:   3'- -GUUGGCGUUuaaGC----------UGaCCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 20220 0.67 0.914944
Target:  5'- uCGGCCGCGAGUaCGGCcagagccUGGAgACGgucACCa -3'
miRNA:   3'- -GUUGGCGUUUAaGCUG-------ACCU-UGC---UGG- -5'
12020 3' -47.8 NC_003278.1 + 7900 0.67 0.915619
Target:  5'- gAACgGCAGAUggUGAaccuaUGGGACuGACCa -3'
miRNA:   3'- gUUGgCGUUUAa-GCUg----ACCUUG-CUGG- -5'
12020 3' -47.8 NC_003278.1 + 21615 0.67 0.926596
Target:  5'- cCAGCCGCugcuggccauGCUGG-GCGACCu -3'
miRNA:   3'- -GUUGGCGuuuaagc---UGACCuUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 18902 0.69 0.860916
Target:  5'- -uGCUGC-AGUUCGAUgUGGccGCGACCa -3'
miRNA:   3'- guUGGCGuUUAAGCUG-ACCu-UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32375 0.7 0.823403
Target:  5'- gAGCCgGCAg---CGACUGGcgcagccugAACGACCu -3'
miRNA:   3'- gUUGG-CGUuuaaGCUGACC---------UUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 21372 0.7 0.803198
Target:  5'- -cGCCGCGA--UCGACUGGuucAAgGACa -3'
miRNA:   3'- guUGGCGUUuaAGCUGACC---UUgCUGg -5'
12020 3' -47.8 NC_003278.1 + 29840 0.78 0.369981
Target:  5'- -cGCCGcCAAGUccuUCGACUGGGACGAg- -3'
miRNA:   3'- guUGGC-GUUUA---AGCUGACCUUGCUgg -5'
12020 3' -47.8 NC_003278.1 + 4436 0.77 0.450103
Target:  5'- aCGGCCGCAAcaucgagcgCGACUGGAucgagcagAUGGCCg -3'
miRNA:   3'- -GUUGGCGUUuaa------GCUGACCU--------UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 18342 0.74 0.585508
Target:  5'- uGACgGCAuccAGUUCGAgUGGAcccucgGCGGCCu -3'
miRNA:   3'- gUUGgCGU---UUAAGCUgACCU------UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32678 0.74 0.609135
Target:  5'- gCGGCCagaguuucgGCAAGUacccggucacCGACUGGGACGGCCc -3'
miRNA:   3'- -GUUGG---------CGUUUAa---------GCUGACCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 7529 0.73 0.656569
Target:  5'- gAGCCaaAGAUcaUCGACUGGAACGAa- -3'
miRNA:   3'- gUUGGcgUUUA--AGCUGACCUUGCUgg -5'
12020 3' -47.8 NC_003278.1 + 20042 0.72 0.69191
Target:  5'- gCAGCCGCGGg--CGACaUGGAccucgGCGACa -3'
miRNA:   3'- -GUUGGCGUUuaaGCUG-ACCU-----UGCUGg -5'
12020 3' -47.8 NC_003278.1 + 4406 0.71 0.760399
Target:  5'- --uCCGCAucgccgUCGAa-GGGGCGACCa -3'
miRNA:   3'- guuGGCGUuua---AGCUgaCCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 34172 0.7 0.803198
Target:  5'- gAACCugGCgGAAUUCauGAuCUGGAGCGGCCc -3'
miRNA:   3'- gUUGG--CG-UUUAAG--CU-GACCUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.