miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12020 3' -47.8 NC_003278.1 + 28739 1.14 0.00198
Target:  5'- aCAACCGCAAAUUCGACUGGAACGACCu -3'
miRNA:   3'- -GUUGGCGUUUAAGCUGACCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 2721 0.79 0.325098
Target:  5'- aCGGCCGCcucGAAUUCGacgccgGCUGGAcCGACCu -3'
miRNA:   3'- -GUUGGCG---UUUAAGC------UGACCUuGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 29840 0.78 0.369981
Target:  5'- -cGCCGcCAAGUccuUCGACUGGGACGAg- -3'
miRNA:   3'- guUGGC-GUUUA---AGCUGACCUUGCUgg -5'
12020 3' -47.8 NC_003278.1 + 4436 0.77 0.450103
Target:  5'- aCGGCCGCAAcaucgagcgCGACUGGAucgagcagAUGGCCg -3'
miRNA:   3'- -GUUGGCGUUuaa------GCUGACCU--------UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 2963 0.75 0.538878
Target:  5'- gGGCgGCAAGUUCcgcguGCUGGAGCG-CCa -3'
miRNA:   3'- gUUGgCGUUUAAGc----UGACCUUGCuGG- -5'
12020 3' -47.8 NC_003278.1 + 7241 0.75 0.538878
Target:  5'- uGACCGCAAcUUCGaggcgcGCUGGAuCGACg -3'
miRNA:   3'- gUUGGCGUUuAAGC------UGACCUuGCUGg -5'
12020 3' -47.8 NC_003278.1 + 18342 0.74 0.585508
Target:  5'- uGACgGCAuccAGUUCGAgUGGAcccucgGCGGCCu -3'
miRNA:   3'- gUUGgCGU---UUAAGCUgACCU------UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32678 0.74 0.609135
Target:  5'- gCGGCCagaguuucgGCAAGUacccggucacCGACUGGGACGGCCc -3'
miRNA:   3'- -GUUGG---------CGUUUAa---------GCUGACCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 4229 0.73 0.644718
Target:  5'- aCAACCGCcgccaggccAAAUUCcuguACUGGAugGGCUg -3'
miRNA:   3'- -GUUGGCG---------UUUAAGc---UGACCUugCUGG- -5'
12020 3' -47.8 NC_003278.1 + 7529 0.73 0.656569
Target:  5'- gAGCCaaAGAUcaUCGACUGGAACGAa- -3'
miRNA:   3'- gUUGGcgUUUA--AGCUGACCUUGCUgg -5'
12020 3' -47.8 NC_003278.1 + 20042 0.72 0.69191
Target:  5'- gCAGCCGCGGg--CGACaUGGAccucgGCGACa -3'
miRNA:   3'- -GUUGGCGUUuaaGCUG-ACCU-----UGCUGg -5'
12020 3' -47.8 NC_003278.1 + 4406 0.71 0.760399
Target:  5'- --uCCGCAucgccgUCGAa-GGGGCGACCa -3'
miRNA:   3'- guuGGCGUuua---AGCUgaCCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 8283 0.7 0.792776
Target:  5'- gCGACCGCcuuga-GGCUgaggGGAAUGACCa -3'
miRNA:   3'- -GUUGGCGuuuaagCUGA----CCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32589 0.7 0.802165
Target:  5'- gGGCCGCGAcagagaaugcgccGUUCGugggGCUGcuGCGACCg -3'
miRNA:   3'- gUUGGCGUU-------------UAAGC----UGACcuUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 6515 0.7 0.803198
Target:  5'- -cGCCGgAAAUguaCGGCUGGua-GACCg -3'
miRNA:   3'- guUGGCgUUUAa--GCUGACCuugCUGG- -5'
12020 3' -47.8 NC_003278.1 + 21372 0.7 0.803198
Target:  5'- -cGCCGCGA--UCGACUGGuucAAgGACa -3'
miRNA:   3'- guUGGCGUUuaAGCUGACC---UUgCUGg -5'
12020 3' -47.8 NC_003278.1 + 34172 0.7 0.803198
Target:  5'- gAACCugGCgGAAUUCauGAuCUGGAGCGGCCc -3'
miRNA:   3'- gUUGG--CG-UUUAAG--CU-GACCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 7152 0.7 0.803198
Target:  5'- gGAUCGCuguuGAUgugccCGGCUGGGACcgGGCCg -3'
miRNA:   3'- gUUGGCGu---UUAa----GCUGACCUUG--CUGG- -5'
12020 3' -47.8 NC_003278.1 + 30873 0.7 0.823403
Target:  5'- uGGCCGCug--UCGcGCUGG-GCGAUCg -3'
miRNA:   3'- gUUGGCGuuuaAGC-UGACCuUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32375 0.7 0.823403
Target:  5'- gAGCCgGCAg---CGACUGGcgcagccugAACGACCu -3'
miRNA:   3'- gUUGG-CGUuuaaGCUGACC---------UUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.