miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12020 3' -47.8 NC_003278.1 + 7529 0.73 0.656569
Target:  5'- gAGCCaaAGAUcaUCGACUGGAACGAa- -3'
miRNA:   3'- gUUGGcgUUUA--AGCUGACCUUGCUgg -5'
12020 3' -47.8 NC_003278.1 + 20042 0.72 0.69191
Target:  5'- gCAGCCGCGGg--CGACaUGGAccucgGCGACa -3'
miRNA:   3'- -GUUGGCGUUuaaGCUG-ACCU-----UGCUGg -5'
12020 3' -47.8 NC_003278.1 + 4406 0.71 0.760399
Target:  5'- --uCCGCAucgccgUCGAa-GGGGCGACCa -3'
miRNA:   3'- guuGGCGUuua---AGCUgaCCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 34172 0.7 0.803198
Target:  5'- gAACCugGCgGAAUUCauGAuCUGGAGCGGCCc -3'
miRNA:   3'- gUUGG--CG-UUUAAG--CU-GACCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 21372 0.7 0.803198
Target:  5'- -cGCCGCGA--UCGACUGGuucAAgGACa -3'
miRNA:   3'- guUGGCGUUuaAGCUGACC---UUgCUGg -5'
12020 3' -47.8 NC_003278.1 + 32375 0.7 0.823403
Target:  5'- gAGCCgGCAg---CGACUGGcgcagccugAACGACCu -3'
miRNA:   3'- gUUGG-CGUuuaaGCUGACC---------UUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 18902 0.69 0.860916
Target:  5'- -uGCUGC-AGUUCGAUgUGGccGCGACCa -3'
miRNA:   3'- guUGGCGuUUAAGCUG-ACCu-UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32780 0.67 0.928437
Target:  5'- uGGCCGCGAucacggugcCGGCUGGGcCGuCCc -3'
miRNA:   3'- gUUGGCGUUuaa------GCUGACCUuGCuGG- -5'
12020 3' -47.8 NC_003278.1 + 6993 0.67 0.922188
Target:  5'- uCAACCGcCAGAggCGGucaguuucuuCUGGAgccguucgGCGGCCu -3'
miRNA:   3'- -GUUGGC-GUUUaaGCU----------GACCU--------UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32718 0.68 0.90873
Target:  5'- uGGCCGCGGGgaUCGGCgacGGAguACGugCc -3'
miRNA:   3'- gUUGGCGUUUa-AGCUGa--CCU--UGCugG- -5'
12020 3' -47.8 NC_003278.1 + 18863 0.68 0.886178
Target:  5'- -cGCCGCGcuugaUCGGCUGGucgaggggGACGACg -3'
miRNA:   3'- guUGGCGUuua--AGCUGACC--------UUGCUGg -5'
12020 3' -47.8 NC_003278.1 + 31561 0.69 0.869626
Target:  5'- aCAGCCuuggccuguugGCGAAUUCGGCUGcAGCGuugguguuuGCCg -3'
miRNA:   3'- -GUUGG-----------CGUUUAAGCUGACcUUGC---------UGG- -5'
12020 3' -47.8 NC_003278.1 + 13214 0.67 0.93997
Target:  5'- aCAACgGCAGg--CGAUgGGcuGACGGCCg -3'
miRNA:   3'- -GUUGgCGUUuaaGCUGaCC--UUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 19247 0.66 0.945258
Target:  5'- gCAGCUGCAGGUcauucgccaUCGGC-GGAACu-CCg -3'
miRNA:   3'- -GUUGGCGUUUA---------AGCUGaCCUUGcuGG- -5'
12020 3' -47.8 NC_003278.1 + 4129 0.66 0.945258
Target:  5'- gGACCGCGA---CGGaUGGGACcgGGCCg -3'
miRNA:   3'- gUUGGCGUUuaaGCUgACCUUG--CUGG- -5'
12020 3' -47.8 NC_003278.1 + 32225 0.66 0.945258
Target:  5'- gAAgCGCuuccgCGACUGGGccaGACCg -3'
miRNA:   3'- gUUgGCGuuuaaGCUGACCUug-CUGG- -5'
12020 3' -47.8 NC_003278.1 + 8176 0.66 0.952133
Target:  5'- gUAGCCgacGCAGG-UCGGCaGGAucagcgacagcaggcGCGACCa -3'
miRNA:   3'- -GUUGG---CGUUUaAGCUGaCCU---------------UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 22217 0.66 0.954441
Target:  5'- aGGCCGUAGAUgcguccggugcccUCGACcaUGGGccaGGCCg -3'
miRNA:   3'- gUUGGCGUUUA-------------AGCUG--ACCUug-CUGG- -5'
12020 3' -47.8 NC_003278.1 + 33157 0.66 0.959251
Target:  5'- -cGCgGCGAGUUCcaGGgUGGuaAACGGCCu -3'
miRNA:   3'- guUGgCGUUUAAG--CUgACC--UUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 2721 0.79 0.325098
Target:  5'- aCGGCCGCcucGAAUUCGacgccgGCUGGAcCGACCu -3'
miRNA:   3'- -GUUGGCG---UUUAAGC------UGACCUuGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.