miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12021 5' -59.6 NC_003278.1 + 12961 0.68 0.300993
Target:  5'- cGCUGGCCaGCAuGuUGGCGAgAGCCGCc -3'
miRNA:   3'- cCGGCUGG-CGU-C-GCUGUUgUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 21004 0.68 0.300993
Target:  5'- aGGCCGGCCaGCAugcggaucgguGCGAaCAGCAGUuucaGCa -3'
miRNA:   3'- -CCGGCUGG-CGU-----------CGCU-GUUGUCGg---CGc -5'
12021 5' -59.6 NC_003278.1 + 22033 0.68 0.300993
Target:  5'- cGUCGGUCGCGGCGACGACGcgaucacccuGCCcgGCGu -3'
miRNA:   3'- cCGGCUGGCGUCGCUGUUGU----------CGG--CGC- -5'
12021 5' -59.6 NC_003278.1 + 13194 0.68 0.300993
Target:  5'- aGGCCG-CC-CAG-GGCAACGGCaGCGc -3'
miRNA:   3'- -CCGGCuGGcGUCgCUGUUGUCGgCGC- -5'
12021 5' -59.6 NC_003278.1 + 7394 0.68 0.293596
Target:  5'- uGGCaGACUGCAcuGCGcGCAgauACAGCUGCa -3'
miRNA:   3'- -CCGgCUGGCGU--CGC-UGU---UGUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 35024 0.68 0.293596
Target:  5'- uGCCGuCC-CAG-GGCAACAGCCGg- -3'
miRNA:   3'- cCGGCuGGcGUCgCUGUUGUCGGCgc -5'
12021 5' -59.6 NC_003278.1 + 13926 0.68 0.293596
Target:  5'- cGUCGA-CGuCAGCGACAACGGUCuCGa -3'
miRNA:   3'- cCGGCUgGC-GUCGCUGUUGUCGGcGC- -5'
12021 5' -59.6 NC_003278.1 + 7829 0.68 0.293596
Target:  5'- cGCCGG-CGguGCGACcguAguGCCGCc -3'
miRNA:   3'- cCGGCUgGCguCGCUGu--UguCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 22994 0.68 0.286341
Target:  5'- cGGCCGGCagGCAGa-GCAgGCAGCCGg- -3'
miRNA:   3'- -CCGGCUGg-CGUCgcUGU-UGUCGGCgc -5'
12021 5' -59.6 NC_003278.1 + 7201 0.68 0.286341
Target:  5'- cGGUCauuGCCGCGGUGAuCAGCgucaaccgcgAGCUGCGg -3'
miRNA:   3'- -CCGGc--UGGCGUCGCU-GUUG----------UCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 30053 0.68 0.279228
Target:  5'- aGCCaGGCCGCAGcCGACAACcucaaccaccuGGgCGUGc -3'
miRNA:   3'- cCGG-CUGGCGUC-GCUGUUG-----------UCgGCGC- -5'
12021 5' -59.6 NC_003278.1 + 8021 0.68 0.268141
Target:  5'- cGCCGGCCGUGGCGGugguggugagguCAGCCauGCGg -3'
miRNA:   3'- cCGGCUGGCGUCGCUguu---------GUCGG--CGC- -5'
12021 5' -59.6 NC_003278.1 + 31458 0.68 0.265425
Target:  5'- uGGCC-AUCGCugGGCGAguGCgAGCCGCc -3'
miRNA:   3'- -CCGGcUGGCG--UCGCUguUG-UCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 27230 0.68 0.265425
Target:  5'- -aCUGGCaCGCcGCGACcucGCGGCCGCa -3'
miRNA:   3'- ccGGCUG-GCGuCGCUGu--UGUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 31556 0.68 0.265425
Target:  5'- cGGCCaGGaaaaCGCAGgGAgGGCGGCgGCa -3'
miRNA:   3'- -CCGG-CUg---GCGUCgCUgUUGUCGgCGc -5'
12021 5' -59.6 NC_003278.1 + 19954 0.69 0.258734
Target:  5'- gGGCCuguuGCCGCAGCGcCuGCAuCUGCGg -3'
miRNA:   3'- -CCGGc---UGGCGUCGCuGuUGUcGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 26677 0.69 0.251533
Target:  5'- cGCCGgcagcaaACCGCucAGCGACGAcCAGuuGCu -3'
miRNA:   3'- cCGGC-------UGGCG--UCGCUGUU-GUCggCGc -5'
12021 5' -59.6 NC_003278.1 + 12118 0.69 0.241981
Target:  5'- cGCCGGCgGUaccaccgaacucaucAGCGACGGCGGCaucCGCa -3'
miRNA:   3'- cCGGCUGgCG---------------UCGCUGUUGUCG---GCGc -5'
12021 5' -59.6 NC_003278.1 + 32208 0.69 0.239485
Target:  5'- gGGCCaGACCGCccAGCucGCcGCAGUCGUGa -3'
miRNA:   3'- -CCGG-CUGGCG--UCGc-UGuUGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 19747 0.69 0.239485
Target:  5'- cGCUGGCCgGCAcCGGCAugGCGGCaCGCGc -3'
miRNA:   3'- cCGGCUGG-CGUcGCUGU--UGUCG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.