miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12021 5' -59.6 NC_003278.1 + 9718 0.69 0.232732
Target:  5'- cGCCGGCUGCaacAGCGccccgcuaucaccGgAGCGGCCGCu -3'
miRNA:   3'- cCGGCUGGCG---UCGC-------------UgUUGUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 9769 0.66 0.374004
Target:  5'- uGGCUGucCCGCcGUGACGcccuGCAGCCuggagucaGCGg -3'
miRNA:   3'- -CCGGCu-GGCGuCGCUGU----UGUCGG--------CGC- -5'
12021 5' -59.6 NC_003278.1 + 9798 0.66 0.399955
Target:  5'- uGGUaagCGGCCGCuccGGUGAUAgcggggcgcuguuGCAGCCgGCGa -3'
miRNA:   3'- -CCG---GCUGGCG---UCGCUGU-------------UGUCGG-CGC- -5'
12021 5' -59.6 NC_003278.1 + 10009 0.7 0.210074
Target:  5'- cGGCCGGguCCGCAGC-ACcuCGGCCGa- -3'
miRNA:   3'- -CCGGCU--GGCGUCGcUGuuGUCGGCgc -5'
12021 5' -59.6 NC_003278.1 + 11864 0.67 0.316218
Target:  5'- uGGUCcACCGCGGCGAUggU-GCCgagGCGg -3'
miRNA:   3'- -CCGGcUGGCGUCGCUGuuGuCGG---CGC- -5'
12021 5' -59.6 NC_003278.1 + 11873 0.66 0.391779
Target:  5'- cGGCUGGCUGCcuuG-GGCAuc-GCCGCGg -3'
miRNA:   3'- -CCGGCUGGCGu--CgCUGUuguCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 11941 0.75 0.086762
Target:  5'- cGCCGGcCCGCGGCGAUgcccaaGGCAGCCaGCc -3'
miRNA:   3'- cCGGCU-GGCGUCGCUG------UUGUCGG-CGc -5'
12021 5' -59.6 NC_003278.1 + 12118 0.69 0.241981
Target:  5'- cGCCGGCgGUaccaccgaacucaucAGCGACGGCGGCaucCGCa -3'
miRNA:   3'- cCGGCUGgCG---------------UCGCUGUUGUCG---GCGc -5'
12021 5' -59.6 NC_003278.1 + 12961 0.68 0.300993
Target:  5'- cGCUGGCCaGCAuGuUGGCGAgAGCCGCc -3'
miRNA:   3'- cCGGCUGG-CGU-C-GCUGUUgUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 13017 0.68 0.300993
Target:  5'- uGCCGgaACUGCuggagucCGACGACAGCCuGCGc -3'
miRNA:   3'- cCGGC--UGGCGuc-----GCUGUUGUCGG-CGC- -5'
12021 5' -59.6 NC_003278.1 + 13186 0.67 0.308534
Target:  5'- aGGCaucgccgacgCGACCGuCGGCGGCG-CGGgCGUGg -3'
miRNA:   3'- -CCG----------GCUGGC-GUCGCUGUuGUCgGCGC- -5'
12021 5' -59.6 NC_003278.1 + 13194 0.68 0.300993
Target:  5'- aGGCCG-CC-CAG-GGCAACGGCaGCGc -3'
miRNA:   3'- -CCGGCuGGcGUCgCUGUUGUCGgCGC- -5'
12021 5' -59.6 NC_003278.1 + 13734 0.66 0.356785
Target:  5'- cGUCGAUCGCuGgGACAGCaccuGGCCGg- -3'
miRNA:   3'- cCGGCUGGCGuCgCUGUUG----UCGGCgc -5'
12021 5' -59.6 NC_003278.1 + 13926 0.68 0.293596
Target:  5'- cGUCGA-CGuCAGCGACAACGGUCuCGa -3'
miRNA:   3'- cCGGCUgGC-GUCGCUGUUGUCGGcGC- -5'
12021 5' -59.6 NC_003278.1 + 14165 0.72 0.156196
Target:  5'- cGCUGAUCGCGGCGAgCGA-GGCCGgGa -3'
miRNA:   3'- cCGGCUGGCGUCGCU-GUUgUCGGCgC- -5'
12021 5' -59.6 NC_003278.1 + 14223 0.67 0.324045
Target:  5'- cGGCCucGCuCGCcGCGAuCAGCGcuGCCGCGc -3'
miRNA:   3'- -CCGGc-UG-GCGuCGCU-GUUGU--CGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 14645 0.66 0.382823
Target:  5'- uGGUCGGCgGUGGCGAUuugucuGCGGaUCGCa -3'
miRNA:   3'- -CCGGCUGgCGUCGCUGu-----UGUC-GGCGc -5'
12021 5' -59.6 NC_003278.1 + 14915 0.66 0.40087
Target:  5'- aGGCCGGuaGUAGCc----CGGCCGCGu -3'
miRNA:   3'- -CCGGCUggCGUCGcuguuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 16002 0.67 0.332016
Target:  5'- aGCUGACCauguuccguuGUAGCGGCAGCGccaguacagaccGCCgGCGg -3'
miRNA:   3'- cCGGCUGG----------CGUCGCUGUUGU------------CGG-CGC- -5'
12021 5' -59.6 NC_003278.1 + 16636 0.69 0.227327
Target:  5'- uGGCgCGACCGcCAGCucGACGACaccgacgcccuGGUCGCa -3'
miRNA:   3'- -CCG-GCUGGC-GUCG--CUGUUG-----------UCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.