miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12021 5' -59.6 NC_003278.1 + 2430 0.71 0.188836
Target:  5'- -aCUGGCUGCuGGCGGCggUGGCUGCGa -3'
miRNA:   3'- ccGGCUGGCG-UCGCUGuuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 2579 0.67 0.332016
Target:  5'- cGGCCGGCgGUauaggugaacuGGCGccCAcCGGCCGUGa -3'
miRNA:   3'- -CCGGCUGgCG-----------UCGCu-GUuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 2622 0.74 0.105814
Target:  5'- cGCCGGCCGCAaCGACAACAccgGCCaCGc -3'
miRNA:   3'- cCGGCUGGCGUcGCUGUUGU---CGGcGC- -5'
12021 5' -59.6 NC_003278.1 + 4433 0.69 0.227327
Target:  5'- cGGaCGGCCGCAacaucgagcGCGACuggaucgagcaGAUGGCCGCGc -3'
miRNA:   3'- -CCgGCUGGCGU---------CGCUG-----------UUGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 4477 0.66 0.362748
Target:  5'- cGGCCGuCCGUGGUcgccccuucGACGGCGaugcggaaccauuuGCUGCGg -3'
miRNA:   3'- -CCGGCuGGCGUCG---------CUGUUGU--------------CGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 4986 0.77 0.071004
Target:  5'- cGGCgGGCCGUcgaAGCGAUcgccgagcACAGCCGCGa -3'
miRNA:   3'- -CCGgCUGGCG---UCGCUGu-------UGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 5462 0.67 0.332016
Target:  5'- aGCCGuACCGauaccacuGGCGACGguguacGCaAGCCGCGc -3'
miRNA:   3'- cCGGC-UGGCg-------UCGCUGU------UG-UCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 5749 0.67 0.34013
Target:  5'- gGGuuGGCgGC-GCGGuuggUggUAGCCGCGg -3'
miRNA:   3'- -CCggCUGgCGuCGCU----GuuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 7038 0.66 0.356785
Target:  5'- cGG-CGACCucaAGCGAgCAGCAGCaugaGCGg -3'
miRNA:   3'- -CCgGCUGGcg-UCGCU-GUUGUCGg---CGC- -5'
12021 5' -59.6 NC_003278.1 + 7201 0.68 0.286341
Target:  5'- cGGUCauuGCCGCGGUGAuCAGCgucaaccgcgAGCUGCGg -3'
miRNA:   3'- -CCGGc--UGGCGUCGCU-GUUG----------UCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 7307 0.72 0.147853
Target:  5'- aGCCGGCCGCgaucuucucaaGGCGcCAggcccGCAGCuCGCGg -3'
miRNA:   3'- cCGGCUGGCG-----------UCGCuGU-----UGUCG-GCGC- -5'
12021 5' -59.6 NC_003278.1 + 7394 0.68 0.293596
Target:  5'- uGGCaGACUGCAcuGCGcGCAgauACAGCUGCa -3'
miRNA:   3'- -CCGgCUGGCGU--CGC-UGU---UGUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 7829 0.68 0.293596
Target:  5'- cGCCGG-CGguGCGACcguAguGCCGCc -3'
miRNA:   3'- cCGGCUgGCguCGCUGu--UguCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 7896 0.66 0.380163
Target:  5'- aGGCCaggggggaggguggGGCCGUGGuCGGCca-GGCCGUGg -3'
miRNA:   3'- -CCGG--------------CUGGCGUC-GCUGuugUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 8021 0.68 0.268141
Target:  5'- cGCCGGCCGUGGCGGugguggugagguCAGCCauGCGg -3'
miRNA:   3'- cCGGCUGGCGUCGCUguu---------GUCGG--CGC- -5'
12021 5' -59.6 NC_003278.1 + 8165 0.78 0.053183
Target:  5'- aGGUCGGCaggauCAGCGACAGCAGgCGCGa -3'
miRNA:   3'- -CCGGCUGgc---GUCGCUGUUGUCgGCGC- -5'
12021 5' -59.6 NC_003278.1 + 8464 0.66 0.398129
Target:  5'- aGGCUGgcgagcaacgagacGCUGCGGCGGaAGCGggcGCCGCa -3'
miRNA:   3'- -CCGGC--------------UGGCGUCGCUgUUGU---CGGCGc -5'
12021 5' -59.6 NC_003278.1 + 8606 0.7 0.221447
Target:  5'- uGGCCucaGCaggGCGGCGACGuu-GCCGCGg -3'
miRNA:   3'- -CCGGc--UGg--CGUCGCUGUuguCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 8758 0.67 0.348386
Target:  5'- uGGCCGcCCuCGGCGGCGcugACuGCuCGCa -3'
miRNA:   3'- -CCGGCuGGcGUCGCUGU---UGuCG-GCGc -5'
12021 5' -59.6 NC_003278.1 + 9587 0.88 0.010225
Target:  5'- aGGCCGACCuggaccaaCAGCGGCAGCAGCUGCGc -3'
miRNA:   3'- -CCGGCUGGc-------GUCGCUGUUGUCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.