miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12021 5' -59.6 NC_003278.1 + 29806 1.1 0.000206
Target:  5'- aGGCCGACCGCAGCGACAACAGCCGCGc -3'
miRNA:   3'- -CCGGCUGGCGUCGCUGUUGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 9587 0.88 0.010225
Target:  5'- aGGCCGACCuggaccaaCAGCGGCAGCAGCUGCGc -3'
miRNA:   3'- -CCGGCUGGc-------GUCGCUGUUGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 30812 0.79 0.044663
Target:  5'- uGCCGAUCGCccagcGCGACAGCGGCCagaGCGg -3'
miRNA:   3'- cCGGCUGGCGu----CGCUGUUGUCGG---CGC- -5'
12021 5' -59.6 NC_003278.1 + 23041 0.79 0.045985
Target:  5'- aGGCCGACCGCgacAGCuACGACGGCgUGCGc -3'
miRNA:   3'- -CCGGCUGGCG---UCGcUGUUGUCG-GCGC- -5'
12021 5' -59.6 NC_003278.1 + 8165 0.78 0.053183
Target:  5'- aGGUCGGCaggauCAGCGACAGCAGgCGCGa -3'
miRNA:   3'- -CCGGCUGgc---GUCGCUGUUGUCgGCGC- -5'
12021 5' -59.6 NC_003278.1 + 21971 0.77 0.067032
Target:  5'- cGGCaGACCGaguGGCGACAcgccagcaGCAGCCGCa -3'
miRNA:   3'- -CCGgCUGGCg--UCGCUGU--------UGUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 4986 0.77 0.071004
Target:  5'- cGGCgGGCCGUcgaAGCGAUcgccgagcACAGCCGCGa -3'
miRNA:   3'- -CCGgCUGGCG---UCGCUGu-------UGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 19792 0.76 0.075202
Target:  5'- uGCCGGCCaGC-GCGGCAGCGcucuggauGCCGCGg -3'
miRNA:   3'- cCGGCUGG-CGuCGCUGUUGU--------CGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 29251 0.76 0.084082
Target:  5'- uGGCCG-CCGguGCGAUcuucaccGGCAGCgGCGc -3'
miRNA:   3'- -CCGGCuGGCguCGCUG-------UUGUCGgCGC- -5'
12021 5' -59.6 NC_003278.1 + 11941 0.75 0.086762
Target:  5'- cGCCGGcCCGCGGCGAUgcccaaGGCAGCCaGCc -3'
miRNA:   3'- cCGGCU-GGCGUCGCUG------UUGUCGG-CGc -5'
12021 5' -59.6 NC_003278.1 + 22180 0.75 0.094491
Target:  5'- aGGCCGACC-CGGUGuCAGCcaucuGCCGCa -3'
miRNA:   3'- -CCGGCUGGcGUCGCuGUUGu----CGGCGc -5'
12021 5' -59.6 NC_003278.1 + 33852 0.75 0.09721
Target:  5'- cGGCUu-CCGCGGCuACAcCAGCCGCGu -3'
miRNA:   3'- -CCGGcuGGCGUCGcUGUuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 2622 0.74 0.105814
Target:  5'- cGCCGGCCGCAaCGACAACAccgGCCaCGc -3'
miRNA:   3'- cCGGCUGGCGUcGCUGUUGU---CGGcGC- -5'
12021 5' -59.6 NC_003278.1 + 32983 0.74 0.111943
Target:  5'- cGGCCaGugCGCGGCacGACAACGGUCGaUGg -3'
miRNA:   3'- -CCGG-CugGCGUCG--CUGUUGUCGGC-GC- -5'
12021 5' -59.6 NC_003278.1 + 32251 0.73 0.136098
Target:  5'- aGCCugcgcGCCGuCGGCGACAuccuCGGCCGCa -3'
miRNA:   3'- cCGGc----UGGC-GUCGCUGUu---GUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 22129 0.72 0.143835
Target:  5'- uGCCGGCCaGCucCGGCAGCAGCaCGCc -3'
miRNA:   3'- cCGGCUGG-CGucGCUGUUGUCG-GCGc -5'
12021 5' -59.6 NC_003278.1 + 17076 0.72 0.143835
Target:  5'- aGGCCGAugaUCGCGGUGGCGAUGG-UGCGa -3'
miRNA:   3'- -CCGGCU---GGCGUCGCUGUUGUCgGCGC- -5'
12021 5' -59.6 NC_003278.1 + 21788 0.72 0.143835
Target:  5'- aGGCCGGCgcggGCAGCGACAccGCAGaccugaaaCGCa -3'
miRNA:   3'- -CCGGCUGg---CGUCGCUGU--UGUCg-------GCGc -5'
12021 5' -59.6 NC_003278.1 + 7307 0.72 0.147853
Target:  5'- aGCCGGCCGCgaucuucucaaGGCGcCAggcccGCAGCuCGCGg -3'
miRNA:   3'- cCGGCUGGCG-----------UCGCuGU-----UGUCG-GCGC- -5'
12021 5' -59.6 NC_003278.1 + 14165 0.72 0.156196
Target:  5'- cGCUGAUCGCGGCGAgCGA-GGCCGgGa -3'
miRNA:   3'- cCGGCUGGCGUCGCU-GUUgUCGGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.