miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12021 5' -59.6 NC_003278.1 + 19747 0.69 0.239485
Target:  5'- cGCUGGCCgGCAcCGGCAugGCGGCaCGCGc -3'
miRNA:   3'- cCGGCUGG-CGUcGCUGU--UGUCG-GCGC- -5'
12021 5' -59.6 NC_003278.1 + 2430 0.71 0.188836
Target:  5'- -aCUGGCUGCuGGCGGCggUGGCUGCGa -3'
miRNA:   3'- ccGGCUGGCG-UCGCUGuuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 10009 0.7 0.210074
Target:  5'- cGGCCGGguCCGCAGC-ACcuCGGCCGa- -3'
miRNA:   3'- -CCGGCU--GGCGUCGcUGuuGUCGGCgc -5'
12021 5' -59.6 NC_003278.1 + 17449 0.7 0.210074
Target:  5'- aGGCC-ACCGCcuaccGCGAgAACuucGCCGCGc -3'
miRNA:   3'- -CCGGcUGGCGu----CGCUgUUGu--CGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 18284 0.7 0.210074
Target:  5'- aGGCCuuCCGCgggGGCGGCAugaACGGCC-CGg -3'
miRNA:   3'- -CCGGcuGGCG---UCGCUGU---UGUCGGcGC- -5'
12021 5' -59.6 NC_003278.1 + 31035 0.7 0.215696
Target:  5'- cGCUgGGCCGCAGCGACGcuuGCAGCa--- -3'
miRNA:   3'- cCGG-CUGGCGUCGCUGU---UGUCGgcgc -5'
12021 5' -59.6 NC_003278.1 + 16636 0.69 0.227327
Target:  5'- uGGCgCGACCGcCAGCucGACGACaccgacgcccuGGUCGCa -3'
miRNA:   3'- -CCG-GCUGGC-GUCG--CUGUUG-----------UCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 4433 0.69 0.227327
Target:  5'- cGGaCGGCCGCAacaucgagcGCGACuggaucgagcaGAUGGCCGCGc -3'
miRNA:   3'- -CCgGCUGGCGU---------CGCUG-----------UUGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 9718 0.69 0.232732
Target:  5'- cGCCGGCUGCaacAGCGccccgcuaucaccGgAGCGGCCGCu -3'
miRNA:   3'- cCGGCUGGCG---UCGC-------------UgUUGUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 14165 0.72 0.156196
Target:  5'- cGCUGAUCGCGGCGAgCGA-GGCCGgGa -3'
miRNA:   3'- cCGGCUGGCGUCGCU-GUUgUCGGCgC- -5'
12021 5' -59.6 NC_003278.1 + 21788 0.72 0.143835
Target:  5'- aGGCCGGCgcggGCAGCGACAccGCAGaccugaaaCGCa -3'
miRNA:   3'- -CCGGCUGg---CGUCGCUGU--UGUCg-------GCGc -5'
12021 5' -59.6 NC_003278.1 + 32251 0.73 0.136098
Target:  5'- aGCCugcgcGCCGuCGGCGACAuccuCGGCCGCa -3'
miRNA:   3'- cCGGc----UGGC-GUCGCUGUu---GUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 9587 0.88 0.010225
Target:  5'- aGGCCGACCuggaccaaCAGCGGCAGCAGCUGCGc -3'
miRNA:   3'- -CCGGCUGGc-------GUCGCUGUUGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 30812 0.79 0.044663
Target:  5'- uGCCGAUCGCccagcGCGACAGCGGCCagaGCGg -3'
miRNA:   3'- cCGGCUGGCGu----CGCUGUUGUCGG---CGC- -5'
12021 5' -59.6 NC_003278.1 + 23041 0.79 0.045985
Target:  5'- aGGCCGACCGCgacAGCuACGACGGCgUGCGc -3'
miRNA:   3'- -CCGGCUGGCG---UCGcUGUUGUCG-GCGC- -5'
12021 5' -59.6 NC_003278.1 + 21971 0.77 0.067032
Target:  5'- cGGCaGACCGaguGGCGACAcgccagcaGCAGCCGCa -3'
miRNA:   3'- -CCGgCUGGCg--UCGCUGU--------UGUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 4986 0.77 0.071004
Target:  5'- cGGCgGGCCGUcgaAGCGAUcgccgagcACAGCCGCGa -3'
miRNA:   3'- -CCGgCUGGCG---UCGCUGu-------UGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 29251 0.76 0.084082
Target:  5'- uGGCCG-CCGguGCGAUcuucaccGGCAGCgGCGc -3'
miRNA:   3'- -CCGGCuGGCguCGCUG-------UUGUCGgCGC- -5'
12021 5' -59.6 NC_003278.1 + 33852 0.75 0.09721
Target:  5'- cGGCUu-CCGCGGCuACAcCAGCCGCGu -3'
miRNA:   3'- -CCGGcuGGCGUCGcUGUuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 32983 0.74 0.111943
Target:  5'- cGGCCaGugCGCGGCacGACAACGGUCGaUGg -3'
miRNA:   3'- -CCGG-CugGCGUCG--CUGUUGUCGGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.