miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12022 3' -57.5 NC_003278.1 + 30825 0.69 0.314232
Target:  5'- aGGCCGGCuACCUCGuucuccuGCUGCCUGGuCu -3'
miRNA:   3'- -UCGGCUGuUGGAGU-------UGGUGGACCcGc -5'
12022 3' -57.5 NC_003278.1 + 5975 0.69 0.30719
Target:  5'- cAGCCGGCAACCgaaagaucgccacCGACCucauCCugucgcagaagcgcaUGGGCGg -3'
miRNA:   3'- -UCGGCUGUUGGa------------GUUGGu---GG---------------ACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 5006 0.69 0.30719
Target:  5'- cGCCGAgcaCAGCC---GCgACCUGGGUGa -3'
miRNA:   3'- uCGGCU---GUUGGaguUGgUGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 10380 0.69 0.299507
Target:  5'- cGGCCcauCGACCUCGAUgGCCUcGGUGa -3'
miRNA:   3'- -UCGGcu-GUUGGAGUUGgUGGAcCCGC- -5'
12022 3' -57.5 NC_003278.1 + 14646 0.69 0.291974
Target:  5'- aAGUccgCGGCAACCUUcGCCGuccccaguCCUGGGUGg -3'
miRNA:   3'- -UCG---GCUGUUGGAGuUGGU--------GGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 31572 0.69 0.291974
Target:  5'- uGGCCcacucGACAGCCUUGGCCugUU-GGCGa -3'
miRNA:   3'- -UCGG-----CUGUUGGAGUUGGugGAcCCGC- -5'
12022 3' -57.5 NC_003278.1 + 7863 0.69 0.28459
Target:  5'- aGGCCGugGuucGCCUCGaggACCGCCUcGGUc -3'
miRNA:   3'- -UCGGCugU---UGGAGU---UGGUGGAcCCGc -5'
12022 3' -57.5 NC_003278.1 + 30431 0.7 0.277354
Target:  5'- uAGUCGuaGACCUCccagaacucGGCCACCUcGGGCGc -3'
miRNA:   3'- -UCGGCugUUGGAG---------UUGGUGGA-CCCGC- -5'
12022 3' -57.5 NC_003278.1 + 9549 0.7 0.277354
Target:  5'- cGCUGGCuuuCCUCGccaACUcgGCCUGGGCc -3'
miRNA:   3'- uCGGCUGuu-GGAGU---UGG--UGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 13367 0.7 0.263323
Target:  5'- gAGCCGAUA--CUCGauGCCGCCcGGGCc -3'
miRNA:   3'- -UCGGCUGUugGAGU--UGGUGGaCCCGc -5'
12022 3' -57.5 NC_003278.1 + 28088 0.7 0.263323
Target:  5'- uGGUCGACAGCCccugguUCAuCCGCUgcGGGCGc -3'
miRNA:   3'- -UCGGCUGUUGG------AGUuGGUGGa-CCCGC- -5'
12022 3' -57.5 NC_003278.1 + 17875 0.7 0.256527
Target:  5'- cGgCGAUAGugUCGGCCagcACCUGGGCGg -3'
miRNA:   3'- uCgGCUGUUggAGUUGG---UGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 6198 0.7 0.256527
Target:  5'- cGUCGAggacuaCGGCCUCGGCUGCCUGGuCGa -3'
miRNA:   3'- uCGGCU------GUUGGAGUUGGUGGACCcGC- -5'
12022 3' -57.5 NC_003278.1 + 8286 0.7 0.252519
Target:  5'- cAGgCGACcGCCUUgaggcugaggggaauGACCACCaGGGCGc -3'
miRNA:   3'- -UCgGCUGuUGGAG---------------UUGGUGGaCCCGC- -5'
12022 3' -57.5 NC_003278.1 + 8641 0.7 0.249875
Target:  5'- gGGCCGGCGccaACCUCuacgaggacGGCCACUUcGGCGc -3'
miRNA:   3'- -UCGGCUGU---UGGAG---------UUGGUGGAcCCGC- -5'
12022 3' -57.5 NC_003278.1 + 7021 0.7 0.242723
Target:  5'- gAGCCGGCGgggcgcgggguacGCUcggUCAACCGCCaGaGGCGg -3'
miRNA:   3'- -UCGGCUGU-------------UGG---AGUUGGUGGaC-CCGC- -5'
12022 3' -57.5 NC_003278.1 + 9067 0.71 0.236999
Target:  5'- cGCCGGCA----UAGCCGCCcGGGCGa -3'
miRNA:   3'- uCGGCUGUuggaGUUGGUGGaCCCGC- -5'
12022 3' -57.5 NC_003278.1 + 29591 0.71 0.224683
Target:  5'- cGCCGAagcagguccaCAGCCagucCAGCCACUcgGGGCGg -3'
miRNA:   3'- uCGGCU----------GUUGGa---GUUGGUGGa-CCCGC- -5'
12022 3' -57.5 NC_003278.1 + 31722 0.71 0.212915
Target:  5'- cGGCCGGCcuccgcGACUUCGAgCGCCUGGcCGg -3'
miRNA:   3'- -UCGGCUG------UUGGAGUUgGUGGACCcGC- -5'
12022 3' -57.5 NC_003278.1 + 2155 0.72 0.207232
Target:  5'- uGGCuCGGCAuACCUCGAgcagccucguucUCGCCUGGGUa -3'
miRNA:   3'- -UCG-GCUGU-UGGAGUU------------GGUGGACCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.