miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12025 3' -61 NC_003278.1 + 6554 0.66 0.322534
Target:  5'- uGAcCACCuCGuCCUgGGCGCCCu-UGCCg -3'
miRNA:   3'- gUUuGUGG-GC-GGA-CCGCGGGucGCGG- -5'
12025 3' -61 NC_003278.1 + 8109 0.66 0.322534
Target:  5'- cCGGugGCCaGCCaGGCGCCgAGCa-- -3'
miRNA:   3'- -GUUugUGGgCGGaCCGCGGgUCGcgg -5'
12025 3' -61 NC_003278.1 + 21466 0.66 0.322534
Target:  5'- gCGAACACCCGCgacGGCGaaUGGaUGCCg -3'
miRNA:   3'- -GUUUGUGGGCGga-CCGCggGUC-GCGG- -5'
12025 3' -61 NC_003278.1 + 20265 0.66 0.322534
Target:  5'- -cGGC-CCUGCucggcaacgCUGGCGUCCAGgGCa -3'
miRNA:   3'- guUUGuGGGCG---------GACCGCGGGUCgCGg -5'
12025 3' -61 NC_003278.1 + 13508 0.66 0.322534
Target:  5'- uCGGACAUcgCCGCCacaccaGCCCAgGCGCCc -3'
miRNA:   3'- -GUUUGUG--GGCGGaccg--CGGGU-CGCGG- -5'
12025 3' -61 NC_003278.1 + 12326 0.66 0.314729
Target:  5'- uGAAUGCCCauaCCggcGGCGCCCu-CGCCc -3'
miRNA:   3'- gUUUGUGGGc--GGa--CCGCGGGucGCGG- -5'
12025 3' -61 NC_003278.1 + 9626 0.66 0.314729
Target:  5'- ----gGCCUggGCCUGGCGCUCgcgggaaagGGCgGCCu -3'
miRNA:   3'- guuugUGGG--CGGACCGCGGG---------UCG-CGG- -5'
12025 3' -61 NC_003278.1 + 4234 0.66 0.314729
Target:  5'- --uGCugCCGCCcacccuCGCCCcucaguAGCGCCg -3'
miRNA:   3'- guuUGugGGCGGacc---GCGGG------UCGCGG- -5'
12025 3' -61 NC_003278.1 + 26441 0.66 0.307067
Target:  5'- gAAGUGCCUGCgUGGCgaaGCCCAccGCGCa -3'
miRNA:   3'- gUUUGUGGGCGgACCG---CGGGU--CGCGg -5'
12025 3' -61 NC_003278.1 + 28734 0.66 0.307067
Target:  5'- aGGGCGCgCGCCUcGGUcaCCCAcCGCCg -3'
miRNA:   3'- gUUUGUGgGCGGA-CCGc-GGGUcGCGG- -5'
12025 3' -61 NC_003278.1 + 20329 0.66 0.307067
Target:  5'- ----gACCCGCCUGGgcaCGUCCAagGCgguaGCCa -3'
miRNA:   3'- guuugUGGGCGGACC---GCGGGU--CG----CGG- -5'
12025 3' -61 NC_003278.1 + 20523 0.66 0.307067
Target:  5'- --uGCGCgCCGUCgagGGCGgCCAGUuCCa -3'
miRNA:   3'- guuUGUG-GGCGGa--CCGCgGGUCGcGG- -5'
12025 3' -61 NC_003278.1 + 5216 0.66 0.299549
Target:  5'- --cACugCCGCCaccGGUGaCCgGGgGCCg -3'
miRNA:   3'- guuUGugGGCGGa--CCGC-GGgUCgCGG- -5'
12025 3' -61 NC_003278.1 + 2753 0.66 0.299549
Target:  5'- --cGCACCCccgggaagaaCUGGCGCaCCAGCuGCg -3'
miRNA:   3'- guuUGUGGGcg--------GACCGCG-GGUCG-CGg -5'
12025 3' -61 NC_003278.1 + 17802 0.66 0.299549
Target:  5'- --uACACCCGCac--CGCCCAGgUGCUg -3'
miRNA:   3'- guuUGUGGGCGgaccGCGGGUC-GCGG- -5'
12025 3' -61 NC_003278.1 + 4758 0.66 0.295107
Target:  5'- -cGACuccCCCGCCagccuggguaccgaGGCGCUcuccuuCAGCGCCa -3'
miRNA:   3'- guUUGu--GGGCGGa-------------CCGCGG------GUCGCGG- -5'
12025 3' -61 NC_003278.1 + 21692 0.66 0.292174
Target:  5'- -cGGCGCUCuuGCCcaGGuCGCCCAGCaugGCCa -3'
miRNA:   3'- guUUGUGGG--CGGa-CC-GCGGGUCG---CGG- -5'
12025 3' -61 NC_003278.1 + 21911 0.66 0.292174
Target:  5'- gCAGGCGCgCCGCCUuguuGCGUUC-GCGCUc -3'
miRNA:   3'- -GUUUGUG-GGCGGAc---CGCGGGuCGCGG- -5'
12025 3' -61 NC_003278.1 + 9769 0.66 0.284942
Target:  5'- -uGGCuguCCCGCCgUGaCGCCCuGCaGCCu -3'
miRNA:   3'- guUUGu--GGGCGG-ACcGCGGGuCG-CGG- -5'
12025 3' -61 NC_003278.1 + 9843 0.66 0.284942
Target:  5'- uCGAGCguAUCgGCCUGGCcuggGCCgAguGCGCCg -3'
miRNA:   3'- -GUUUG--UGGgCGGACCG----CGGgU--CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.