miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12026 5' -54.5 NC_003278.1 + 33845 0.69 0.4575
Target:  5'- cCGCCAGcGGCUuccgcGGCuacacCAGCCGCGU-GGa -3'
miRNA:   3'- -GCGGUU-CCGA-----UCGu----GUUGGUGCAgCC- -5'
12026 5' -54.5 NC_003278.1 + 9363 0.69 0.478244
Target:  5'- gCGCCGAGGCcAGCGCGugagccuucugcGCCAggUGUUGu -3'
miRNA:   3'- -GCGGUUCCGaUCGUGU------------UGGU--GCAGCc -5'
12026 5' -54.5 NC_003278.1 + 11892 0.69 0.478244
Target:  5'- uCGCCGcGGGCcGGCGcCGACCGCGaaUGGa -3'
miRNA:   3'- -GCGGU-UCCGaUCGU-GUUGGUGCa-GCC- -5'
12026 5' -54.5 NC_003278.1 + 31515 0.68 0.499442
Target:  5'- gGCCAAGGCUgucgagugggccAGCuacauggcCAACCugG-CGGc -3'
miRNA:   3'- gCGGUUCCGA------------UCGu-------GUUGGugCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 5682 0.68 0.510196
Target:  5'- gCGCCGcGGCUAcCAcCAACCGCGcCGc -3'
miRNA:   3'- -GCGGUuCCGAUcGU-GUUGGUGCaGCc -5'
12026 5' -54.5 NC_003278.1 + 17302 0.68 0.510196
Target:  5'- cCGCCAAGGCccgcuugGGCGugguACCGCGcauccUCGGc -3'
miRNA:   3'- -GCGGUUCCGa------UCGUgu--UGGUGC-----AGCC- -5'
12026 5' -54.5 NC_003278.1 + 2363 0.68 0.521045
Target:  5'- gGUgAAGGCcucGGCACGGCCACccuggcgCGGg -3'
miRNA:   3'- gCGgUUCCGa--UCGUGUUGGUGca-----GCC- -5'
12026 5' -54.5 NC_003278.1 + 13191 0.67 0.576477
Target:  5'- gGCCGAGGCaucGC-CGACgCGacCGUCGGc -3'
miRNA:   3'- gCGGUUCCGau-CGuGUUG-GU--GCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 9667 0.67 0.565259
Target:  5'- gGCCAGcGcCUGGCGCAgcugcuGCCGCuGUUGGu -3'
miRNA:   3'- gCGGUUcC-GAUCGUGU------UGGUG-CAGCC- -5'
12026 5' -54.5 NC_003278.1 + 21601 0.67 0.554099
Target:  5'- cCGUCGAGGCcGGCgACAGCC-UGaCGGc -3'
miRNA:   3'- -GCGGUUCCGaUCG-UGUUGGuGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 3195 0.67 0.554099
Target:  5'- aCGCCGAGGCUuuccagaaccuGCugAuguGCCAguuCGUCGa -3'
miRNA:   3'- -GCGGUUCCGAu----------CGugU---UGGU---GCAGCc -5'
12026 5' -54.5 NC_003278.1 + 22938 0.68 0.543005
Target:  5'- uCGCCcAGGCgugucAGCAgGuUgGCGUCGGa -3'
miRNA:   3'- -GCGGuUCCGa----UCGUgUuGgUGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 11845 0.67 0.587745
Target:  5'- uGCCGAGGCggaucaGGUucuCGAUCAUG-CGGg -3'
miRNA:   3'- gCGGUUCCGa-----UCGu--GUUGGUGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 3988 0.66 0.610388
Target:  5'- gCGCCAGGcGCggauccAGCGCuACCAgGgCGGu -3'
miRNA:   3'- -GCGGUUC-CGa-----UCGUGuUGGUgCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 16725 0.66 0.621745
Target:  5'- uCGUCGcGGUgacGUGCGACCaggGCGUCGGu -3'
miRNA:   3'- -GCGGUuCCGau-CGUGUUGG---UGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 26644 0.66 0.633112
Target:  5'- cCGCCAGGGUaGGCGCcgauGAUCGCGcUGa -3'
miRNA:   3'- -GCGGUUCCGaUCGUG----UUGGUGCaGCc -5'
12026 5' -54.5 NC_003278.1 + 17722 0.66 0.644477
Target:  5'- uGCUggGGCUcuGCAgGucccagaaCACGUCGGc -3'
miRNA:   3'- gCGGuuCCGAu-CGUgUug------GUGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 6255 0.66 0.644477
Target:  5'- aGCCGAGGCcgUAGUccuCGACgACGUaGGc -3'
miRNA:   3'- gCGGUUCCG--AUCGu--GUUGgUGCAgCC- -5'
12026 5' -54.5 NC_003278.1 + 23394 0.66 0.667161
Target:  5'- gCGCUGAGGCUGugcuGCACAuuGCCGCcGUa-- -3'
miRNA:   3'- -GCGGUUCCGAU----CGUGU--UGGUG-CAgcc -5'
12026 5' -54.5 NC_003278.1 + 34388 0.77 0.13723
Target:  5'- gCGCCGGGGCcagUAGCugGACCuuccuCGUCGa -3'
miRNA:   3'- -GCGGUUCCG---AUCGugUUGGu----GCAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.