miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12026 5' -54.5 NC_003278.1 + 4993 0.66 0.614929
Target:  5'- cCGUCGAaGCgaucgccgAGCACAGCCGCGaccugggugagcaacUCGGc -3'
miRNA:   3'- -GCGGUUcCGa-------UCGUGUUGGUGC---------------AGCC- -5'
12026 5' -54.5 NC_003278.1 + 9618 0.68 0.521045
Target:  5'- gCGCCAGGcGCUGGC-CAuCCGCGa--- -3'
miRNA:   3'- -GCGGUUC-CGAUCGuGUuGGUGCagcc -5'
12026 5' -54.5 NC_003278.1 + 30126 0.68 0.531984
Target:  5'- gCGCCGAGGCccgcgugcuggAGUGCuuCCGCGagCGGc -3'
miRNA:   3'- -GCGGUUCCGa----------UCGUGuuGGUGCa-GCC- -5'
12026 5' -54.5 NC_003278.1 + 21517 0.67 0.565259
Target:  5'- gGCCAAGGCcuggucAGCGCGGgC-CGUCaGGc -3'
miRNA:   3'- gCGGUUCCGa-----UCGUGUUgGuGCAG-CC- -5'
12026 5' -54.5 NC_003278.1 + 7208 0.67 0.576477
Target:  5'- uGCCGcGGUgaucAGCGuCAACCGCGagcugCGGg -3'
miRNA:   3'- gCGGUuCCGa---UCGU-GUUGGUGCa----GCC- -5'
12026 5' -54.5 NC_003278.1 + 19722 0.67 0.587745
Target:  5'- aGCCGcGGCauccagAGCGCuGCCGCGcUGGc -3'
miRNA:   3'- gCGGUuCCGa-----UCGUGuUGGUGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 28682 0.67 0.587745
Target:  5'- uGaCCGAGGCgcGCGCccugGGCUACGUCu- -3'
miRNA:   3'- gC-GGUUCCGauCGUG----UUGGUGCAGcc -5'
12026 5' -54.5 NC_003278.1 + 29800 0.67 0.587745
Target:  5'- uGCuCGAGGCcgaccgcAGCgacaACAGCCGCGcCGGc -3'
miRNA:   3'- gCG-GUUCCGa------UCG----UGUUGGUGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 19818 0.66 0.609254
Target:  5'- gGCguGGGCUAcgaguucGaCGCAACgAUGUCGGc -3'
miRNA:   3'- gCGguUCCGAU-------C-GUGUUGgUGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 2363 0.68 0.521045
Target:  5'- gGUgAAGGCcucGGCACGGCCACccuggcgCGGg -3'
miRNA:   3'- gCGgUUCCGa--UCGUGUUGGUGca-----GCC- -5'
12026 5' -54.5 NC_003278.1 + 17302 0.68 0.510196
Target:  5'- cCGCCAAGGCccgcuugGGCGugguACCGCGcauccUCGGc -3'
miRNA:   3'- -GCGGUUCCGa------UCGUgu--UGGUGC-----AGCC- -5'
12026 5' -54.5 NC_003278.1 + 5682 0.68 0.510196
Target:  5'- gCGCCGcGGCUAcCAcCAACCGCGcCGc -3'
miRNA:   3'- -GCGGUuCCGAUcGU-GUUGGUGCaGCc -5'
12026 5' -54.5 NC_003278.1 + 12249 0.77 0.153824
Target:  5'- uCGCCAAGG---GCAuCAGCCugGUCGGu -3'
miRNA:   3'- -GCGGUUCCgauCGU-GUUGGugCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 14619 0.74 0.246062
Target:  5'- aCGCaAGGuGCUGGCcggcaACGGCCugGUCGGc -3'
miRNA:   3'- -GCGgUUC-CGAUCG-----UGUUGGugCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 31638 0.72 0.310547
Target:  5'- gCGCCGcAGGCUucaaccgGGCGCGuCCGCGggUCGGc -3'
miRNA:   3'- -GCGGU-UCCGA-------UCGUGUuGGUGC--AGCC- -5'
12026 5' -54.5 NC_003278.1 + 34475 0.71 0.379741
Target:  5'- uGCUAgcgGGGCggcGUACu-CCACGUCGGa -3'
miRNA:   3'- gCGGU---UCCGau-CGUGuuGGUGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 33845 0.69 0.4575
Target:  5'- cCGCCAGcGGCUuccgcGGCuacacCAGCCGCGU-GGa -3'
miRNA:   3'- -GCGGUU-CCGA-----UCGu----GUUGGUGCAgCC- -5'
12026 5' -54.5 NC_003278.1 + 9363 0.69 0.478244
Target:  5'- gCGCCGAGGCcAGCGCGugagccuucugcGCCAggUGUUGu -3'
miRNA:   3'- -GCGGUUCCGaUCGUGU------------UGGU--GCAGCc -5'
12026 5' -54.5 NC_003278.1 + 11892 0.69 0.478244
Target:  5'- uCGCCGcGGGCcGGCGcCGACCGCGaaUGGa -3'
miRNA:   3'- -GCGGU-UCCGaUCGU-GUUGGUGCa-GCC- -5'
12026 5' -54.5 NC_003278.1 + 31515 0.68 0.499442
Target:  5'- gGCCAAGGCUgucgagugggccAGCuacauggcCAACCugG-CGGc -3'
miRNA:   3'- gCGGUUCCGA------------UCGu-------GUUGGugCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.