miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12026 5' -54.5 NC_003278.1 + 31370 1.1 0.000622
Target:  5'- gCGCCAAGGCUAGCACAACCACGUCGGc -3'
miRNA:   3'- -GCGGUUCCGAUCGUGUUGGUGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 34388 0.77 0.13723
Target:  5'- gCGCCGGGGCcagUAGCugGACCuuccuCGUCGa -3'
miRNA:   3'- -GCGGUUCCG---AUCGugUUGGu----GCAGCc -5'
12026 5' -54.5 NC_003278.1 + 12249 0.77 0.153824
Target:  5'- uCGCCAAGG---GCAuCAGCCugGUCGGu -3'
miRNA:   3'- -GCGGUUCCgauCGU-GUUGGugCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 14619 0.74 0.246062
Target:  5'- aCGCaAGGuGCUGGCcggcaACGGCCugGUCGGc -3'
miRNA:   3'- -GCGgUUC-CGAUCG-----UGUUGGugCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 17379 0.73 0.280815
Target:  5'- aCGCCGAGGau-GCGCGguACCACGcccaagCGGg -3'
miRNA:   3'- -GCGGUUCCgauCGUGU--UGGUGCa-----GCC- -5'
12026 5' -54.5 NC_003278.1 + 22641 0.72 0.295772
Target:  5'- aGCCAgAGGUgcAGCACGgcGCCGCG-CGGg -3'
miRNA:   3'- gCGGU-UCCGa-UCGUGU--UGGUGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 31638 0.72 0.310547
Target:  5'- gCGCCGcAGGCUucaaccgGGCGCGuCCGCGggUCGGc -3'
miRNA:   3'- -GCGGU-UCCGA-------UCGUGUuGGUGC--AGCC- -5'
12026 5' -54.5 NC_003278.1 + 28047 0.72 0.327523
Target:  5'- gGCCGuacugauccuguAGGC-GGCGCAG-CACGUCGGc -3'
miRNA:   3'- gCGGU------------UCCGaUCGUGUUgGUGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 31170 0.72 0.327523
Target:  5'- gGCCAGGGC-GGcCugGACCAUGuucUCGGc -3'
miRNA:   3'- gCGGUUCCGaUC-GugUUGGUGC---AGCC- -5'
12026 5' -54.5 NC_003278.1 + 21118 0.71 0.35295
Target:  5'- gCGCC--GGCcAGCACcGCCACGaCGGc -3'
miRNA:   3'- -GCGGuuCCGaUCGUGuUGGUGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 34475 0.71 0.379741
Target:  5'- uGCUAgcgGGGCggcGUACu-CCACGUCGGa -3'
miRNA:   3'- gCGGU---UCCGau-CGUGuuGGUGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 31771 0.7 0.40786
Target:  5'- uCGCgGAGGCcGGC-CGgguCCACGUCGa -3'
miRNA:   3'- -GCGgUUCCGaUCGuGUu--GGUGCAGCc -5'
12026 5' -54.5 NC_003278.1 + 28572 0.7 0.427315
Target:  5'- uGCCGuGGUgcagcAGCGCGAUgGCGUCGa -3'
miRNA:   3'- gCGGUuCCGa----UCGUGUUGgUGCAGCc -5'
12026 5' -54.5 NC_003278.1 + 5929 0.69 0.437247
Target:  5'- uGCCAgggaucgaucAGGCU-GCugA-CCACGUCGa -3'
miRNA:   3'- gCGGU----------UCCGAuCGugUuGGUGCAGCc -5'
12026 5' -54.5 NC_003278.1 + 28262 0.69 0.44731
Target:  5'- gGCCGAGGC-GGCGgGuuCCuuGUCGGu -3'
miRNA:   3'- gCGGUUCCGaUCGUgUu-GGugCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 33845 0.69 0.4575
Target:  5'- cCGCCAGcGGCUuccgcGGCuacacCAGCCGCGU-GGa -3'
miRNA:   3'- -GCGGUU-CCGA-----UCGu----GUUGGUGCAgCC- -5'
12026 5' -54.5 NC_003278.1 + 13573 0.69 0.4575
Target:  5'- gCGCCuGGGCUGGUgugGCGGCgAUGUCc- -3'
miRNA:   3'- -GCGGuUCCGAUCG---UGUUGgUGCAGcc -5'
12026 5' -54.5 NC_003278.1 + 29445 0.69 0.467813
Target:  5'- aCGCCGccGC--GCACcGCCACGUCGc -3'
miRNA:   3'- -GCGGUucCGauCGUGuUGGUGCAGCc -5'
12026 5' -54.5 NC_003278.1 + 6802 0.69 0.467813
Target:  5'- uCGCgcGGGCUucgucgGGCAuguCGGCCugGUCGGu -3'
miRNA:   3'- -GCGguUCCGA------UCGU---GUUGGugCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 8473 0.69 0.477196
Target:  5'- gCGCCGagcAGGCUGGCgaGCAacgagacGCUGCGgCGGa -3'
miRNA:   3'- -GCGGU---UCCGAUCG--UGU-------UGGUGCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.