Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 12032 | 3' | -61.8 | NC_003278.1 | + | 21439 | 0.72 | 0.097827 |
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Target: 5'- gGCgGGUucACCaUGGCCGgCCUGGCCc -3' miRNA: 3'- gCGaCCGu-UGGgACCGGCaGGACCGG- -5' |
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| 12032 | 3' | -61.8 | NC_003278.1 | + | 20271 | 0.73 | 0.092466 |
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Target: 5'- uGCUcGGCAACgCUGG-CGUCCagggcagcaUGGCCg -3' miRNA: 3'- gCGA-CCGUUGgGACCgGCAGG---------ACCGG- -5' |
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| 12032 | 3' | -61.8 | NC_003278.1 | + | 22828 | 0.73 | 0.087384 |
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Target: 5'- gCGCUGGCGGgCCU-GCCGaUCCUgcagcuggaccaGGCCa -3' miRNA: 3'- -GCGACCGUUgGGAcCGGC-AGGA------------CCGG- -5' |
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| 12032 | 3' | -61.8 | NC_003278.1 | + | 29796 | 0.73 | 0.084944 |
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Target: 5'- gCGCaGGCccGCCUUGGUCaucuucgacggGUCCUGGCCu -3' miRNA: 3'- -GCGaCCGu-UGGGACCGG-----------CAGGACCGG- -5' |
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| 12032 | 3' | -61.8 | NC_003278.1 | + | 32813 | 0.74 | 0.071616 |
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Target: 5'- cCGCgacaGCAaaugcACCCUGGCCGguaguaCUGGCCg -3' miRNA: 3'- -GCGac--CGU-----UGGGACCGGCag----GACCGG- -5' |
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| 12032 | 3' | -61.8 | NC_003278.1 | + | 8740 | 0.84 | 0.01285 |
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Target: 5'- uCGCUGGCccgaaGACCCUGGCCGcCCUcGGCg -3' miRNA: 3'- -GCGACCG-----UUGGGACCGGCaGGA-CCGg -5' |
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| 12032 | 3' | -61.8 | NC_003278.1 | + | 33425 | 1.1 | 0.000097 |
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Target: 5'- uCGCUGGCAACCCUGGCCGUCCUGGCCu -3' miRNA: 3'- -GCGACCGUUGGGACCGGCAGGACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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