miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12033 3' -50.6 NC_003278.1 + 8827 0.66 0.826087
Target:  5'- --gCAggUGCGAgCAGucagcGCCGCCGa -3'
miRNA:   3'- auaGUuuGCGUUgGUCuaa--CGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 22331 0.66 0.826087
Target:  5'- -cUgAGACGCAuCCuguGAUcgaUGCCGCCc -3'
miRNA:   3'- auAgUUUGCGUuGGu--CUA---ACGGCGGu -5'
12033 3' -50.6 NC_003278.1 + 2553 0.66 0.825096
Target:  5'- gAUC-GGCGUGGCCGGuguugucGUUGCgGCCGg -3'
miRNA:   3'- aUAGuUUGCGUUGGUC-------UAACGgCGGU- -5'
12033 3' -50.6 NC_003278.1 + 29893 0.66 0.816075
Target:  5'- cGUUggGCGUgaccGGCCAGAagaCCGCCGg -3'
miRNA:   3'- aUAGuuUGCG----UUGGUCUaacGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 17266 0.66 0.816075
Target:  5'- --cCGAugGCAaguacACCGGcAUgaaggccuugcuUGCCGCCAa -3'
miRNA:   3'- auaGUUugCGU-----UGGUC-UA------------ACGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 2014 0.66 0.816075
Target:  5'- ---aGAACGUcuCCAGAUcggUGCCGCg- -3'
miRNA:   3'- auagUUUGCGuuGGUCUA---ACGGCGgu -5'
12033 3' -50.6 NC_003278.1 + 32999 0.66 0.815061
Target:  5'- gGUCGAACcCAACUacgccguAGug-GCCGCCAg -3'
miRNA:   3'- aUAGUUUGcGUUGG-------UCuaaCGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 6010 0.66 0.805834
Target:  5'- cUGUCGcagaAGCGCAugGgCGGccUGCCGCCGg -3'
miRNA:   3'- -AUAGU----UUGCGU--UgGUCuaACGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 8330 0.66 0.805834
Target:  5'- -cUCGGAUGCGgcGCCAGAg-GUCGUCGa -3'
miRNA:   3'- auAGUUUGCGU--UGGUCUaaCGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 12348 0.66 0.805834
Target:  5'- cGUCGuAGCGCcGCCcGGUaugacGCCGCCGu -3'
miRNA:   3'- aUAGU-UUGCGuUGGuCUAa----CGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 28481 0.66 0.805834
Target:  5'- --cCAGACGCcGCgCGGGcUGUCGCCc -3'
miRNA:   3'- auaGUUUGCGuUG-GUCUaACGGCGGu -5'
12033 3' -50.6 NC_003278.1 + 18950 0.66 0.805834
Target:  5'- cAUCGAACuGCAGCaggucgagCAGGUgcagGCCGCgCAg -3'
miRNA:   3'- aUAGUUUG-CGUUG--------GUCUAa---CGGCG-GU- -5'
12033 3' -50.6 NC_003278.1 + 14292 0.66 0.795379
Target:  5'- gGUCAGcCGUcucGCCGGGcgcGCCGCCGg -3'
miRNA:   3'- aUAGUUuGCGu--UGGUCUaa-CGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 17166 0.66 0.795379
Target:  5'- --gCAAuCGcCGACCAGGccaacGCCGCCAc -3'
miRNA:   3'- auaGUUuGC-GUUGGUCUaa---CGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 20093 0.66 0.795379
Target:  5'- aUGUCGccCGCGgcuGCCAGGUUGagcaUGCCGg -3'
miRNA:   3'- -AUAGUuuGCGU---UGGUCUAACg---GCGGU- -5'
12033 3' -50.6 NC_003278.1 + 2498 0.66 0.784721
Target:  5'- --gCAAAcguCGCAGCCAcc--GCCGCCAg -3'
miRNA:   3'- auaGUUU---GCGUUGGUcuaaCGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 30250 0.67 0.740364
Target:  5'- gGUCGAcGCGCugcGCCuGGUggUGCCGCUg -3'
miRNA:   3'- aUAGUU-UGCGu--UGGuCUA--ACGGCGGu -5'
12033 3' -50.6 NC_003278.1 + 585 0.67 0.739224
Target:  5'- --aCGAAgGCAGCCAagugauuGAacUUGCCGUCAa -3'
miRNA:   3'- auaGUUUgCGUUGGU-------CU--AACGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 28750 0.67 0.728915
Target:  5'- uUcgCAGACGUAGcCCAGGgcGCgCGCCu -3'
miRNA:   3'- -AuaGUUUGCGUU-GGUCUaaCG-GCGGu -5'
12033 3' -50.6 NC_003278.1 + 31872 0.67 0.717352
Target:  5'- --gCGGGCGcCGACCGGA-UGCCGUg- -3'
miRNA:   3'- auaGUUUGC-GUUGGUCUaACGGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.