Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12033 | 3' | -50.6 | NC_003278.1 | + | 8330 | 0.66 | 0.805834 |
Target: 5'- -cUCGGAUGCGgcGCCAGAg-GUCGUCGa -3' miRNA: 3'- auAGUUUGCGU--UGGUCUaaCGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 8827 | 0.66 | 0.826087 |
Target: 5'- --gCAggUGCGAgCAGucagcGCCGCCGa -3' miRNA: 3'- auaGUuuGCGUUgGUCuaa--CGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 12209 | 0.67 | 0.717352 |
Target: 5'- aUGUCGccGACG-AugCGGA-UGCCGCCGu -3' miRNA: 3'- -AUAGU--UUGCgUugGUCUaACGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 28750 | 0.67 | 0.728915 |
Target: 5'- uUcgCAGACGUAGcCCAGGgcGCgCGCCu -3' miRNA: 3'- -AuaGUUUGCGUU-GGUCUaaCG-GCGGu -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 14292 | 0.66 | 0.795379 |
Target: 5'- gGUCAGcCGUcucGCCGGGcgcGCCGCCGg -3' miRNA: 3'- aUAGUUuGCGu--UGGUCUaa-CGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 20093 | 0.66 | 0.795379 |
Target: 5'- aUGUCGccCGCGgcuGCCAGGUUGagcaUGCCGg -3' miRNA: 3'- -AUAGUuuGCGU---UGGUCUAACg---GCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 14812 | 0.72 | 0.450109 |
Target: 5'- ----cAGCGUggUCGGGUUGCUGCCGg -3' miRNA: 3'- auaguUUGCGuuGGUCUAACGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 28680 | 0.71 | 0.501826 |
Target: 5'- uUGUCcAGCGC--CCAGAUcaguuucggcagcuUGCCGCCAc -3' miRNA: 3'- -AUAGuUUGCGuuGGUCUA--------------ACGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 9091 | 0.68 | 0.670249 |
Target: 5'- --cCAGGCGCugguGCuCGGcggUGCCGCCGg -3' miRNA: 3'- auaGUUUGCGu---UG-GUCua-ACGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 7834 | 0.68 | 0.680938 |
Target: 5'- gGUCAcGCcggcgguGCGACCGuagUGCCGCCAg -3' miRNA: 3'- aUAGUuUG-------CGUUGGUcuaACGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 2498 | 0.66 | 0.784721 |
Target: 5'- --gCAAAcguCGCAGCCAcc--GCCGCCAg -3' miRNA: 3'- auaGUUU---GCGUUGGUcuaaCGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 12348 | 0.66 | 0.805834 |
Target: 5'- cGUCGuAGCGCcGCCcGGUaugacGCCGCCGu -3' miRNA: 3'- aUAGU-UUGCGuUGGuCUAa----CGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 28412 | 0.68 | 0.658332 |
Target: 5'- gAUUAGGCGUucCCAGua-GCCGCCu -3' miRNA: 3'- aUAGUUUGCGuuGGUCuaaCGGCGGu -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 28481 | 0.66 | 0.805834 |
Target: 5'- --cCAGACGCcGCgCGGGcUGUCGCCc -3' miRNA: 3'- auaGUUUGCGuUG-GUCUaACGGCGGu -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 6039 | 0.68 | 0.682123 |
Target: 5'- gGUCGGugGCGAUCuucucGGUUGCCGgCu -3' miRNA: 3'- aUAGUUugCGUUGGu----CUAACGGCgGu -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 19126 | 0.69 | 0.642799 |
Target: 5'- gGUCGGccauggcguuuucuACGCGAUCAGGgagGCUGCCu -3' miRNA: 3'- aUAGUU--------------UGCGUUGGUCUaa-CGGCGGu -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 3706 | 0.72 | 0.429004 |
Target: 5'- ---gGGGCGCAACCAGAUauuccUGUCgGCCAg -3' miRNA: 3'- auagUUUGCGUUGGUCUA-----ACGG-CGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 18950 | 0.66 | 0.805834 |
Target: 5'- cAUCGAACuGCAGCaggucgagCAGGUgcagGCCGCgCAg -3' miRNA: 3'- aUAGUUUG-CGUUG--------GUCUAa---CGGCG-GU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 32999 | 0.66 | 0.815061 |
Target: 5'- gGUCGAACcCAACUacgccguAGug-GCCGCCAg -3' miRNA: 3'- aUAGUUUGcGUUGG-------UCuaaCGGCGGU- -5' |
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12033 | 3' | -50.6 | NC_003278.1 | + | 2014 | 0.66 | 0.816075 |
Target: 5'- ---aGAACGUcuCCAGAUcggUGCCGCg- -3' miRNA: 3'- auagUUUGCGuuGGUCUA---ACGGCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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