miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12097 5' -56.9 NC_003309.1 + 27329 0.68 0.500578
Target:  5'- cGGCGAAC-UGCCGAUGCaucaGAcuggauCGCCa- -3'
miRNA:   3'- -CUGCUUGuACGGCUACGg---CU------GCGGgc -5'
12097 5' -56.9 NC_003309.1 + 31733 0.66 0.628362
Target:  5'- cGAUGAGCGUGagug-GCCGugGCCg- -3'
miRNA:   3'- -CUGCUUGUACggcuaCGGCugCGGgc -5'
12097 5' -56.9 NC_003309.1 + 31942 0.69 0.450602
Target:  5'- cACGAACAguucuucGCCGcccgcgGCCGGCGCCa- -3'
miRNA:   3'- cUGCUUGUa------CGGCua----CGGCUGCGGgc -5'
12097 5' -56.9 NC_003309.1 + 32203 0.72 0.311522
Target:  5'- aGCGA--GUGCCGAUcaggucGCCGACGCCg- -3'
miRNA:   3'- cUGCUugUACGGCUA------CGGCUGCGGgc -5'
12097 5' -56.9 NC_003309.1 + 33656 0.69 0.421963
Target:  5'- aGCGAACGgcugGCUGAgGCCGGCaucgaGCCCu -3'
miRNA:   3'- cUGCUUGUa---CGGCUaCGGCUG-----CGGGc -5'
12097 5' -56.9 NC_003309.1 + 34533 0.69 0.421963
Target:  5'- aGCGAGCAcccGUCGAUGUgGGCGgCCGu -3'
miRNA:   3'- cUGCUUGUa--CGGCUACGgCUGCgGGC- -5'
12097 5' -56.9 NC_003309.1 + 36239 0.7 0.412663
Target:  5'- gGACGAGCAcuCCGAUcGCCaGuauCGCCCGu -3'
miRNA:   3'- -CUGCUUGUacGGCUA-CGG-Cu--GCGGGC- -5'
12097 5' -56.9 NC_003309.1 + 36564 0.69 0.450602
Target:  5'- -uCGAACAUcGUCGcgGCCGGCGCgaUCGa -3'
miRNA:   3'- cuGCUUGUA-CGGCuaCGGCUGCG--GGC- -5'
12097 5' -56.9 NC_003309.1 + 37327 0.66 0.606639
Target:  5'- cACGGGCGUcuaccugcGCgCGAucgUGCgCGACGCCCu -3'
miRNA:   3'- cUGCUUGUA--------CG-GCU---ACG-GCUGCGGGc -5'
12097 5' -56.9 NC_003309.1 + 42660 0.66 0.639233
Target:  5'- aGCGAACggGCCGgcGauGGCGUCCu -3'
miRNA:   3'- cUGCUUGuaCGGCuaCggCUGCGGGc -5'
12097 5' -56.9 NC_003309.1 + 44154 0.68 0.521251
Target:  5'- cGACGAGuccgcuuuuCGUGCggUGAUGCuCGuCGCCCGc -3'
miRNA:   3'- -CUGCUU---------GUACG--GCUACG-GCuGCGGGC- -5'
12097 5' -56.9 NC_003309.1 + 45272 0.66 0.650099
Target:  5'- aGCGGAUuugGUCGaAUGCCGGcCGCCgCGu -3'
miRNA:   3'- cUGCUUGua-CGGC-UACGGCU-GCGG-GC- -5'
12097 5' -56.9 NC_003309.1 + 45569 0.69 0.421963
Target:  5'- gGACGAGCAUGCCGucGCagguucuGCGUCCGc -3'
miRNA:   3'- -CUGCUUGUACGGCuaCGgc-----UGCGGGC- -5'
12097 5' -56.9 NC_003309.1 + 45677 0.67 0.563516
Target:  5'- --aGGACGuUGCCcuUGcCCGACGCCCc -3'
miRNA:   3'- cugCUUGU-ACGGcuAC-GGCUGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.