miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12102 5' -60.3 NC_003309.1 + 22854 0.66 0.443975
Target:  5'- -gCGaCCGGCaUGAguguucccgcACGCacGCCGGUCGCc -3'
miRNA:   3'- agGC-GGUCGaGCU----------UGCG--CGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 10252 0.66 0.443975
Target:  5'- aUCCGCCcAGCcgCGAGCGacaCGCCGa--GCu -3'
miRNA:   3'- -AGGCGG-UCGa-GCUUGC---GCGGCcagCG- -5'
12102 5' -60.3 NC_003309.1 + 13181 0.66 0.443975
Target:  5'- cCCGCCAacaagcccacccGCggCGAaucGCGCgaaGCCGGaUCGCc -3'
miRNA:   3'- aGGCGGU------------CGa-GCU---UGCG---CGGCC-AGCG- -5'
12102 5' -60.3 NC_003309.1 + 10755 0.66 0.443975
Target:  5'- gCCGCCGcCUCaa--GCGCCGuccGUCGCu -3'
miRNA:   3'- aGGCGGUcGAGcuugCGCGGC---CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 242 0.66 0.462009
Target:  5'- gUCCGgCGGCUCGAuguuCGUGaccaagccgaaauCCGGcUCGUc -3'
miRNA:   3'- -AGGCgGUCGAGCUu---GCGC-------------GGCC-AGCG- -5'
12102 5' -60.3 NC_003309.1 + 49487 0.66 0.462969
Target:  5'- cUCCGCU--CUCGAugaAUGCGCCGaGcacgCGCg -3'
miRNA:   3'- -AGGCGGucGAGCU---UGCGCGGC-Ca---GCG- -5'
12102 5' -60.3 NC_003309.1 + 21994 0.66 0.462969
Target:  5'- cUCCGCguGCUCGAuga-GCC-GUUGCu -3'
miRNA:   3'- -AGGCGguCGAGCUugcgCGGcCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 47961 0.66 0.462969
Target:  5'- -gCGCCAGCUCGcgcucggcgaAGCuGCGaCCGauaguucggucGUCGCg -3'
miRNA:   3'- agGCGGUCGAGC----------UUG-CGC-GGC-----------CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 53270 0.66 0.462969
Target:  5'- aCCGCaaccGCUC--GCGCGCCGucuUCGCc -3'
miRNA:   3'- aGGCGgu--CGAGcuUGCGCGGCc--AGCG- -5'
12102 5' -60.3 NC_003309.1 + 39617 0.66 0.482381
Target:  5'- gCUGCCAaGCaugCGAGCGUGCUGcGcuUCGUg -3'
miRNA:   3'- aGGCGGU-CGa--GCUUGCGCGGC-C--AGCG- -5'
12102 5' -60.3 NC_003309.1 + 43294 0.66 0.482381
Target:  5'- cCCaUCAGUUCG-ACGaugGCCGcGUCGCa -3'
miRNA:   3'- aGGcGGUCGAGCuUGCg--CGGC-CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 40473 0.66 0.492234
Target:  5'- --aGCCAGa--GGACGCcggaGuuGGUCGCg -3'
miRNA:   3'- aggCGGUCgagCUUGCG----CggCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 12645 0.66 0.492234
Target:  5'- gCCGCU-GCUCGAGauaGCCGcGcUCGCg -3'
miRNA:   3'- aGGCGGuCGAGCUUgcgCGGC-C-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.