miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12102 5' -60.3 NC_003309.1 + 10873 0.68 0.332237
Target:  5'- uUCCGCUcGCUC--GCGCGCCuGcGUgGCa -3'
miRNA:   3'- -AGGCGGuCGAGcuUGCGCGG-C-CAgCG- -5'
12102 5' -60.3 NC_003309.1 + 11988 0.68 0.34006
Target:  5'- cCCGCgcgcggCAGCcgCGGcGCGCGCCGcGUCGg -3'
miRNA:   3'- aGGCG------GUCGa-GCU-UGCGCGGC-CAGCg -5'
12102 5' -60.3 NC_003309.1 + 10569 0.68 0.348016
Target:  5'- gCCGCCGcCUCGAcggcACGCGCuuCGGcaagcuUCGCu -3'
miRNA:   3'- aGGCGGUcGAGCU----UGCGCG--GCC------AGCG- -5'
12102 5' -60.3 NC_003309.1 + 5173 0.68 0.356104
Target:  5'- aUCGCCAGuUUCGAggcgagcuGCGCGUCGccgCGCg -3'
miRNA:   3'- aGGCGGUC-GAGCU--------UGCGCGGCca-GCG- -5'
12102 5' -60.3 NC_003309.1 + 19038 0.67 0.381152
Target:  5'- aUCgGCCGuuGCUgGAucuGCGCGCC-GUCGUc -3'
miRNA:   3'- -AGgCGGU--CGAgCU---UGCGCGGcCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 18715 0.67 0.381152
Target:  5'- cUCGCCGGCUgCG-GCGCGgauaCGGcCGCc -3'
miRNA:   3'- aGGCGGUCGA-GCuUGCGCg---GCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 9424 0.67 0.388892
Target:  5'- --aGCCGGCcgUCGAcgagagaccgcgcAUGCGgCGGUCGUa -3'
miRNA:   3'- aggCGGUCG--AGCU-------------UGCGCgGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 45384 0.67 0.389758
Target:  5'- uUCCGCaaugcGCUCG-ACGUGCuCGGgaaaccggCGCg -3'
miRNA:   3'- -AGGCGgu---CGAGCuUGCGCG-GCCa-------GCG- -5'
12102 5' -60.3 NC_003309.1 + 3160 0.67 0.389758
Target:  5'- -aCGCUGGCUUGGuccuugaGCGCCGGg-GCa -3'
miRNA:   3'- agGCGGUCGAGCUug-----CGCGGCCagCG- -5'
12102 5' -60.3 NC_003309.1 + 16789 0.67 0.396734
Target:  5'- -gCGCCGGCcguugaacacggCGAACGUgagGCCGccGUCGCg -3'
miRNA:   3'- agGCGGUCGa-----------GCUUGCG---CGGC--CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 16095 0.67 0.398491
Target:  5'- aUCCGCUucGCUCGGcUGUGCCGa-CGCc -3'
miRNA:   3'- -AGGCGGu-CGAGCUuGCGCGGCcaGCG- -5'
12102 5' -60.3 NC_003309.1 + 11792 0.67 0.407348
Target:  5'- aUCGCCuuUUCGAgcgacuuguACGCGUCGG-CGCg -3'
miRNA:   3'- aGGCGGucGAGCU---------UGCGCGGCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 46747 0.67 0.407348
Target:  5'- cUUCGCCAGC----GCGCGCCGGa--- -3'
miRNA:   3'- -AGGCGGUCGagcuUGCGCGGCCagcg -5'
12102 5' -60.3 NC_003309.1 + 10360 0.67 0.410925
Target:  5'- gCCGCCucguguuGCUugaucgucuccucgaCGAGCGCucGCCGGgCGCc -3'
miRNA:   3'- aGGCGGu------CGA---------------GCUUGCG--CGGCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 7239 0.67 0.415424
Target:  5'- aCCGaCAGgUCGAgauacccgcguuuGCGCGCCGGcaguacCGCc -3'
miRNA:   3'- aGGCgGUCgAGCU-------------UGCGCGGCCa-----GCG- -5'
12102 5' -60.3 NC_003309.1 + 27752 0.67 0.416327
Target:  5'- gUCGCCAGa-CG-ACGCGCCGcccggCGCa -3'
miRNA:   3'- aGGCGGUCgaGCuUGCGCGGCca---GCG- -5'
12102 5' -60.3 NC_003309.1 + 513 0.67 0.416327
Target:  5'- cUCGCCGGgUCGAGCcccagcauuGCGCCGaaGcCGCc -3'
miRNA:   3'- aGGCGGUCgAGCUUG---------CGCGGC--CaGCG- -5'
12102 5' -60.3 NC_003309.1 + 33335 0.67 0.425427
Target:  5'- gUCCGCCuaccaauuGCUUcgGGGCGuCGCCGGUg-- -3'
miRNA:   3'- -AGGCGGu-------CGAG--CUUGC-GCGGCCAgcg -5'
12102 5' -60.3 NC_003309.1 + 27841 0.67 0.425427
Target:  5'- gCCGCCccauucGCcCGuAUGCGagaaCCGGUCGCg -3'
miRNA:   3'- aGGCGGu-----CGaGCuUGCGC----GGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22477 0.66 0.434644
Target:  5'- aCCGCCgacgcggcGGCaUCGuGCGCGgCGaUCGCa -3'
miRNA:   3'- aGGCGG--------UCG-AGCuUGCGCgGCcAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.