miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12102 5' -60.3 NC_003309.1 + 11988 0.68 0.34006
Target:  5'- cCCGCgcgcggCAGCcgCGGcGCGCGCCGcGUCGg -3'
miRNA:   3'- aGGCG------GUCGa-GCU-UGCGCGGC-CAGCg -5'
12102 5' -60.3 NC_003309.1 + 12645 0.66 0.492234
Target:  5'- gCCGCU-GCUCGAGauaGCCGcGcUCGCg -3'
miRNA:   3'- aGGCGGuCGAGCUUgcgCGGC-C-AGCG- -5'
12102 5' -60.3 NC_003309.1 + 13064 0.7 0.267152
Target:  5'- cUCGCC-GUUCGAAagcUGCGCCGGgauacugUCGCu -3'
miRNA:   3'- aGGCGGuCGAGCUU---GCGCGGCC-------AGCG- -5'
12102 5' -60.3 NC_003309.1 + 13181 0.66 0.443975
Target:  5'- cCCGCCAacaagcccacccGCggCGAaucGCGCgaaGCCGGaUCGCc -3'
miRNA:   3'- aGGCGGU------------CGa-GCU---UGCG---CGGCC-AGCG- -5'
12102 5' -60.3 NC_003309.1 + 16095 0.67 0.398491
Target:  5'- aUCCGCUucGCUCGGcUGUGCCGa-CGCc -3'
miRNA:   3'- -AGGCGGu-CGAGCUuGCGCGGCcaGCG- -5'
12102 5' -60.3 NC_003309.1 + 16789 0.67 0.396734
Target:  5'- -gCGCCGGCcguugaacacggCGAACGUgagGCCGccGUCGCg -3'
miRNA:   3'- agGCGGUCGa-----------GCUUGCG---CGGC--CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 18715 0.67 0.381152
Target:  5'- cUCGCCGGCUgCG-GCGCGgauaCGGcCGCc -3'
miRNA:   3'- aGGCGGUCGA-GCuUGCGCg---GCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 19038 0.67 0.381152
Target:  5'- aUCgGCCGuuGCUgGAucuGCGCGCC-GUCGUc -3'
miRNA:   3'- -AGgCGGU--CGAgCU---UGCGCGGcCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 21994 0.66 0.462969
Target:  5'- cUCCGCguGCUCGAuga-GCC-GUUGCu -3'
miRNA:   3'- -AGGCGguCGAGCUugcgCGGcCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22340 0.7 0.260665
Target:  5'- -gCGCCGaucagguGCUCGAcgcaaGCGCCGGcCGCc -3'
miRNA:   3'- agGCGGU-------CGAGCUug---CGCGGCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 22440 0.72 0.18329
Target:  5'- gCUGCCGGCgUCGAGCGCGgCG--CGCg -3'
miRNA:   3'- aGGCGGUCG-AGCUUGCGCgGCcaGCG- -5'
12102 5' -60.3 NC_003309.1 + 22477 0.66 0.434644
Target:  5'- aCCGCCgacgcggcGGCaUCGuGCGCGgCGaUCGCa -3'
miRNA:   3'- aGGCGG--------UCG-AGCuUGCGCgGCcAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22645 0.69 0.324546
Target:  5'- -aCGCCGGCggcgcUGGAaGCGCCGGgcaCGCc -3'
miRNA:   3'- agGCGGUCGa----GCUUgCGCGGCCa--GCG- -5'
12102 5' -60.3 NC_003309.1 + 22747 0.71 0.224977
Target:  5'- gCCGUCAGUuugUCGAucuCGCGCUGaucGUCGCc -3'
miRNA:   3'- aGGCGGUCG---AGCUu--GCGCGGC---CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22854 0.66 0.443975
Target:  5'- -gCGaCCGGCaUGAguguucccgcACGCacGCCGGUCGCc -3'
miRNA:   3'- agGC-GGUCGaGCU----------UGCG--CGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 27752 0.67 0.416327
Target:  5'- gUCGCCAGa-CG-ACGCGCCGcccggCGCa -3'
miRNA:   3'- aGGCGGUCgaGCuUGCGCGGCca---GCG- -5'
12102 5' -60.3 NC_003309.1 + 27841 0.67 0.425427
Target:  5'- gCCGCCccauucGCcCGuAUGCGagaaCCGGUCGCg -3'
miRNA:   3'- aGGCGGu-----CGaGCuUGCGC----GGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 31529 0.76 0.096534
Target:  5'- -gCGCCAGCUCGAACuaCGCCGGccaGCc -3'
miRNA:   3'- agGCGGUCGAGCUUGc-GCGGCCag-CG- -5'
12102 5' -60.3 NC_003309.1 + 33335 0.67 0.425427
Target:  5'- gUCCGCCuaccaauuGCUUcgGGGCGuCGCCGGUg-- -3'
miRNA:   3'- -AGGCGGu-------CGAG--CUUGC-GCGGCCAgcg -5'
12102 5' -60.3 NC_003309.1 + 36573 0.71 0.224977
Target:  5'- aCCGCCuuCUCGAAcaucguCGCgGCCGG-CGCg -3'
miRNA:   3'- aGGCGGucGAGCUU------GCG-CGGCCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.