Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12102 | 5' | -60.3 | NC_003309.1 | + | 22645 | 0.69 | 0.324546 |
Target: 5'- -aCGCCGGCggcgcUGGAaGCGCCGGgcaCGCc -3' miRNA: 3'- agGCGGUCGa----GCUUgCGCGGCCa--GCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 22477 | 0.66 | 0.434644 |
Target: 5'- aCCGCCgacgcggcGGCaUCGuGCGCGgCGaUCGCa -3' miRNA: 3'- aGGCGG--------UCG-AGCuUGCGCgGCcAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 22440 | 0.72 | 0.18329 |
Target: 5'- gCUGCCGGCgUCGAGCGCGgCG--CGCg -3' miRNA: 3'- aGGCGGUCG-AGCUUGCGCgGCcaGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 22340 | 0.7 | 0.260665 |
Target: 5'- -gCGCCGaucagguGCUCGAcgcaaGCGCCGGcCGCc -3' miRNA: 3'- agGCGGU-------CGAGCUug---CGCGGCCaGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 21994 | 0.66 | 0.462969 |
Target: 5'- cUCCGCguGCUCGAuga-GCC-GUUGCu -3' miRNA: 3'- -AGGCGguCGAGCUugcgCGGcCAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 19038 | 0.67 | 0.381152 |
Target: 5'- aUCgGCCGuuGCUgGAucuGCGCGCC-GUCGUc -3' miRNA: 3'- -AGgCGGU--CGAgCU---UGCGCGGcCAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 18715 | 0.67 | 0.381152 |
Target: 5'- cUCGCCGGCUgCG-GCGCGgauaCGGcCGCc -3' miRNA: 3'- aGGCGGUCGA-GCuUGCGCg---GCCaGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 16789 | 0.67 | 0.396734 |
Target: 5'- -gCGCCGGCcguugaacacggCGAACGUgagGCCGccGUCGCg -3' miRNA: 3'- agGCGGUCGa-----------GCUUGCG---CGGC--CAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 16095 | 0.67 | 0.398491 |
Target: 5'- aUCCGCUucGCUCGGcUGUGCCGa-CGCc -3' miRNA: 3'- -AGGCGGu-CGAGCUuGCGCGGCcaGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 13181 | 0.66 | 0.443975 |
Target: 5'- cCCGCCAacaagcccacccGCggCGAaucGCGCgaaGCCGGaUCGCc -3' miRNA: 3'- aGGCGGU------------CGa-GCU---UGCG---CGGCC-AGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 13064 | 0.7 | 0.267152 |
Target: 5'- cUCGCC-GUUCGAAagcUGCGCCGGgauacugUCGCu -3' miRNA: 3'- aGGCGGuCGAGCUU---GCGCGGCC-------AGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 12645 | 0.66 | 0.492234 |
Target: 5'- gCCGCU-GCUCGAGauaGCCGcGcUCGCg -3' miRNA: 3'- aGGCGGuCGAGCUUgcgCGGC-C-AGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 11988 | 0.68 | 0.34006 |
Target: 5'- cCCGCgcgcggCAGCcgCGGcGCGCGCCGcGUCGg -3' miRNA: 3'- aGGCG------GUCGa-GCU-UGCGCGGC-CAGCg -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 11792 | 0.67 | 0.407348 |
Target: 5'- aUCGCCuuUUCGAgcgacuuguACGCGUCGG-CGCg -3' miRNA: 3'- aGGCGGucGAGCU---------UGCGCGGCCaGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 11744 | 0.69 | 0.309566 |
Target: 5'- cCCGCCAuGCg-GAccuGCGCGUCGuUCGCg -3' miRNA: 3'- aGGCGGU-CGagCU---UGCGCGGCcAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 11495 | 0.69 | 0.286011 |
Target: 5'- cUCGCCGugUCGAuCGCGCCGGcggcucgaacaaguUCGCa -3' miRNA: 3'- aGGCGGUcgAGCUuGCGCGGCC--------------AGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 10873 | 0.68 | 0.332237 |
Target: 5'- uUCCGCUcGCUC--GCGCGCCuGcGUgGCa -3' miRNA: 3'- -AGGCGGuCGAGcuUGCGCGG-C-CAgCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 10755 | 0.66 | 0.443975 |
Target: 5'- gCCGCCGcCUCaa--GCGCCGuccGUCGCu -3' miRNA: 3'- aGGCGGUcGAGcuugCGCGGC---CAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 10612 | 0.73 | 0.156652 |
Target: 5'- aCUGCCGGCaacguUCGcGCGUGCC-GUCGCg -3' miRNA: 3'- aGGCGGUCG-----AGCuUGCGCGGcCAGCG- -5' |
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12102 | 5' | -60.3 | NC_003309.1 | + | 10569 | 0.68 | 0.348016 |
Target: 5'- gCCGCCGcCUCGAcggcACGCGCuuCGGcaagcuUCGCu -3' miRNA: 3'- aGGCGGUcGAGCU----UGCGCG--GCC------AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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