miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12102 5' -60.3 NC_003309.1 + 53270 0.66 0.462969
Target:  5'- aCCGCaaccGCUC--GCGCGCCGucuUCGCc -3'
miRNA:   3'- aGGCGgu--CGAGcuUGCGCGGCc--AGCG- -5'
12102 5' -60.3 NC_003309.1 + 49487 0.66 0.462969
Target:  5'- cUCCGCU--CUCGAugaAUGCGCCGaGcacgCGCg -3'
miRNA:   3'- -AGGCGGucGAGCU---UGCGCGGC-Ca---GCG- -5'
12102 5' -60.3 NC_003309.1 + 47961 0.66 0.462969
Target:  5'- -gCGCCAGCUCGcgcucggcgaAGCuGCGaCCGauaguucggucGUCGCg -3'
miRNA:   3'- agGCGGUCGAGC----------UUG-CGC-GGC-----------CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 46747 0.67 0.407348
Target:  5'- cUUCGCCAGC----GCGCGCCGGa--- -3'
miRNA:   3'- -AGGCGGUCGagcuUGCGCGGCCagcg -5'
12102 5' -60.3 NC_003309.1 + 46151 0.69 0.322265
Target:  5'- aCCGCCAuGCagcagUCGAGCagcuucaaagcagaGCGCaCGGUCGg -3'
miRNA:   3'- aGGCGGU-CG-----AGCUUG--------------CGCG-GCCAGCg -5'
12102 5' -60.3 NC_003309.1 + 45770 0.78 0.07537
Target:  5'- aCCGUCuucgGGUUCGGcgccugauguACGCGCCGGUCGUa -3'
miRNA:   3'- aGGCGG----UCGAGCU----------UGCGCGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 45384 0.67 0.389758
Target:  5'- uUCCGCaaugcGCUCG-ACGUGCuCGGgaaaccggCGCg -3'
miRNA:   3'- -AGGCGgu---CGAGCuUGCGCG-GCCa-------GCG- -5'
12102 5' -60.3 NC_003309.1 + 44860 0.7 0.2812
Target:  5'- gUUCGCCGGCggCGAucCGCGCaaGGuUCGCu -3'
miRNA:   3'- -AGGCGGUCGa-GCUu-GCGCGg-CC-AGCG- -5'
12102 5' -60.3 NC_003309.1 + 43529 0.72 0.193024
Target:  5'- gCCGUCGGCggccaucGCGCGCaucaGGUCGCg -3'
miRNA:   3'- aGGCGGUCGagcu---UGCGCGg---CCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 43294 0.66 0.482381
Target:  5'- cCCaUCAGUUCG-ACGaugGCCGcGUCGCa -3'
miRNA:   3'- aGGcGGUCGAGCuUGCg--CGGC-CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 42146 0.69 0.302275
Target:  5'- cCUGcCCAGCUCGGaaGCGCGCguugacgcucUGGaCGCa -3'
miRNA:   3'- aGGC-GGUCGAGCU--UGCGCG----------GCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 40473 0.66 0.492234
Target:  5'- --aGCCAGa--GGACGCcggaGuuGGUCGCg -3'
miRNA:   3'- aggCGGUCgagCUUGCG----CggCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 39617 0.66 0.482381
Target:  5'- gCUGCCAaGCaugCGAGCGUGCUGcGcuUCGUg -3'
miRNA:   3'- aGGCGGU-CGa--GCUUGCGCGGC-C--AGCG- -5'
12102 5' -60.3 NC_003309.1 + 36573 0.71 0.224977
Target:  5'- aCCGCCuuCUCGAAcaucguCGCgGCCGG-CGCg -3'
miRNA:   3'- aGGCGGucGAGCUU------GCG-CGGCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 33335 0.67 0.425427
Target:  5'- gUCCGCCuaccaauuGCUUcgGGGCGuCGCCGGUg-- -3'
miRNA:   3'- -AGGCGGu-------CGAG--CUUGC-GCGGCCAgcg -5'
12102 5' -60.3 NC_003309.1 + 31529 0.76 0.096534
Target:  5'- -gCGCCAGCUCGAACuaCGCCGGccaGCc -3'
miRNA:   3'- agGCGGUCGAGCUUGc-GCGGCCag-CG- -5'
12102 5' -60.3 NC_003309.1 + 27841 0.67 0.425427
Target:  5'- gCCGCCccauucGCcCGuAUGCGagaaCCGGUCGCg -3'
miRNA:   3'- aGGCGGu-----CGaGCuUGCGC----GGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 27752 0.67 0.416327
Target:  5'- gUCGCCAGa-CG-ACGCGCCGcccggCGCa -3'
miRNA:   3'- aGGCGGUCgaGCuUGCGCGGCca---GCG- -5'
12102 5' -60.3 NC_003309.1 + 22854 0.66 0.443975
Target:  5'- -gCGaCCGGCaUGAguguucccgcACGCacGCCGGUCGCc -3'
miRNA:   3'- agGC-GGUCGaGCU----------UGCG--CGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22747 0.71 0.224977
Target:  5'- gCCGUCAGUuugUCGAucuCGCGCUGaucGUCGCc -3'
miRNA:   3'- aGGCGGUCG---AGCUu--GCGCGGC---CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.