miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12102 5' -60.3 NC_003309.1 + 4167 1.12 0.000222
Target:  5'- gUCCGCCAGCUCGAACGCGCCGGUCGCg -3'
miRNA:   3'- -AGGCGGUCGAGCUUGCGCGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 45770 0.78 0.07537
Target:  5'- aCCGUCuucgGGUUCGGcgccugauguACGCGCCGGUCGUa -3'
miRNA:   3'- aGGCGG----UCGAGCU----------UGCGCGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 31529 0.76 0.096534
Target:  5'- -gCGCCAGCUCGAACuaCGCCGGccaGCc -3'
miRNA:   3'- agGCGGUCGAGCUUGc-GCGGCCag-CG- -5'
12102 5' -60.3 NC_003309.1 + 10612 0.73 0.156652
Target:  5'- aCUGCCGGCaacguUCGcGCGUGCC-GUCGCg -3'
miRNA:   3'- aGGCGGUCG-----AGCuUGCGCGGcCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22440 0.72 0.18329
Target:  5'- gCUGCCGGCgUCGAGCGCGgCG--CGCg -3'
miRNA:   3'- aGGCGGUCG-AGCUUGCGCgGCcaGCG- -5'
12102 5' -60.3 NC_003309.1 + 43529 0.72 0.193024
Target:  5'- gCCGUCGGCggccaucGCGCGCaucaGGUCGCg -3'
miRNA:   3'- aGGCGGUCGagcu---UGCGCGg---CCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22747 0.71 0.224977
Target:  5'- gCCGUCAGUuugUCGAucuCGCGCUGaucGUCGCc -3'
miRNA:   3'- aGGCGGUCG---AGCUu--GCGCGGC---CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 36573 0.71 0.224977
Target:  5'- aCCGCCuuCUCGAAcaucguCGCgGCCGG-CGCg -3'
miRNA:   3'- aGGCGGucGAGCUU------GCG-CGGCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 9739 0.71 0.236586
Target:  5'- aUCCGCugauaCAGCUCGGccguCGCGUcgagCGGUUGCc -3'
miRNA:   3'- -AGGCG-----GUCGAGCUu---GCGCG----GCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22340 0.7 0.260665
Target:  5'- -gCGCCGaucagguGCUCGAcgcaaGCGCCGGcCGCc -3'
miRNA:   3'- agGCGGU-------CGAGCUug---CGCGGCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 13064 0.7 0.267152
Target:  5'- cUCGCC-GUUCGAAagcUGCGCCGGgauacugUCGCu -3'
miRNA:   3'- aGGCGGuCGAGCUU---GCGCGGCC-------AGCG- -5'
12102 5' -60.3 NC_003309.1 + 44860 0.7 0.2812
Target:  5'- gUUCGCCGGCggCGAucCGCGCaaGGuUCGCu -3'
miRNA:   3'- -AGGCGGUCGa-GCUu-GCGCGg-CC-AGCG- -5'
12102 5' -60.3 NC_003309.1 + 11495 0.69 0.286011
Target:  5'- cUCGCCGugUCGAuCGCGCCGGcggcucgaacaaguUCGCa -3'
miRNA:   3'- aGGCGGUcgAGCUuGCGCGGCC--------------AGCG- -5'
12102 5' -60.3 NC_003309.1 + 42146 0.69 0.302275
Target:  5'- cCUGcCCAGCUCGGaaGCGCGCguugacgcucUGGaCGCa -3'
miRNA:   3'- aGGC-GGUCGAGCU--UGCGCG----------GCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 11744 0.69 0.309566
Target:  5'- cCCGCCAuGCg-GAccuGCGCGUCGuUCGCg -3'
miRNA:   3'- aGGCGGU-CGagCU---UGCGCGGCcAGCG- -5'
12102 5' -60.3 NC_003309.1 + 7618 0.69 0.316241
Target:  5'- cUCgGCCucGC-CGAucgACGCaucaaacGCCGGUCGCa -3'
miRNA:   3'- -AGgCGGu-CGaGCU---UGCG-------CGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 46151 0.69 0.322265
Target:  5'- aCCGCCAuGCagcagUCGAGCagcuucaaagcagaGCGCaCGGUCGg -3'
miRNA:   3'- aGGCGGU-CG-----AGCUUG--------------CGCG-GCCAGCg -5'
12102 5' -60.3 NC_003309.1 + 7807 0.69 0.324546
Target:  5'- -gCGCCAugUCGAGCGCGCCauGUaCGCg -3'
miRNA:   3'- agGCGGUcgAGCUUGCGCGGc-CA-GCG- -5'
12102 5' -60.3 NC_003309.1 + 22645 0.69 0.324546
Target:  5'- -aCGCCGGCggcgcUGGAaGCGCCGGgcaCGCc -3'
miRNA:   3'- agGCGGUCGa----GCUUgCGCGGCCa--GCG- -5'
12102 5' -60.3 NC_003309.1 + 5573 0.69 0.324546
Target:  5'- -aCGCCuuGUcuUCGcGCGCGCCGaUCGCg -3'
miRNA:   3'- agGCGGu-CG--AGCuUGCGCGGCcAGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.