miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12102 5' -60.3 NC_003309.1 + 22747 0.71 0.224977
Target:  5'- gCCGUCAGUuugUCGAucuCGCGCUGaucGUCGCc -3'
miRNA:   3'- aGGCGGUCG---AGCUu--GCGCGGC---CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 43529 0.72 0.193024
Target:  5'- gCCGUCGGCggccaucGCGCGCaucaGGUCGCg -3'
miRNA:   3'- aGGCGGUCGagcu---UGCGCGg---CCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22440 0.72 0.18329
Target:  5'- gCUGCCGGCgUCGAGCGCGgCG--CGCg -3'
miRNA:   3'- aGGCGGUCG-AGCUUGCGCgGCcaGCG- -5'
12102 5' -60.3 NC_003309.1 + 10612 0.73 0.156652
Target:  5'- aCUGCCGGCaacguUCGcGCGUGCC-GUCGCg -3'
miRNA:   3'- aGGCGGUCG-----AGCuUGCGCGGcCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 31529 0.76 0.096534
Target:  5'- -gCGCCAGCUCGAACuaCGCCGGccaGCc -3'
miRNA:   3'- agGCGGUCGAGCUUGc-GCGGCCag-CG- -5'
12102 5' -60.3 NC_003309.1 + 45770 0.78 0.07537
Target:  5'- aCCGUCuucgGGUUCGGcgccugauguACGCGCCGGUCGUa -3'
miRNA:   3'- aGGCGG----UCGAGCU----------UGCGCGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 4167 1.12 0.000222
Target:  5'- gUCCGCCAGCUCGAACGCGCCGGUCGCg -3'
miRNA:   3'- -AGGCGGUCGAGCUUGCGCGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22477 0.66 0.434644
Target:  5'- aCCGCCgacgcggcGGCaUCGuGCGCGgCGaUCGCa -3'
miRNA:   3'- aGGCGG--------UCG-AGCuUGCGCgGCcAGCG- -5'
12102 5' -60.3 NC_003309.1 + 40473 0.66 0.492234
Target:  5'- --aGCCAGa--GGACGCcggaGuuGGUCGCg -3'
miRNA:   3'- aggCGGUCgagCUUGCG----CggCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 43294 0.66 0.482381
Target:  5'- cCCaUCAGUUCG-ACGaugGCCGcGUCGCa -3'
miRNA:   3'- aGGcGGUCGAGCuUGCg--CGGC-CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 39617 0.66 0.482381
Target:  5'- gCUGCCAaGCaugCGAGCGUGCUGcGcuUCGUg -3'
miRNA:   3'- aGGCGGU-CGa--GCUUGCGCGGC-C--AGCG- -5'
12102 5' -60.3 NC_003309.1 + 49487 0.66 0.462969
Target:  5'- cUCCGCU--CUCGAugaAUGCGCCGaGcacgCGCg -3'
miRNA:   3'- -AGGCGGucGAGCU---UGCGCGGC-Ca---GCG- -5'
12102 5' -60.3 NC_003309.1 + 21994 0.66 0.462969
Target:  5'- cUCCGCguGCUCGAuga-GCC-GUUGCu -3'
miRNA:   3'- -AGGCGguCGAGCUugcgCGGcCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 47961 0.66 0.462969
Target:  5'- -gCGCCAGCUCGcgcucggcgaAGCuGCGaCCGauaguucggucGUCGCg -3'
miRNA:   3'- agGCGGUCGAGC----------UUG-CGC-GGC-----------CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 53270 0.66 0.462969
Target:  5'- aCCGCaaccGCUC--GCGCGCCGucuUCGCc -3'
miRNA:   3'- aGGCGgu--CGAGcuUGCGCGGCc--AGCG- -5'
12102 5' -60.3 NC_003309.1 + 242 0.66 0.462009
Target:  5'- gUCCGgCGGCUCGAuguuCGUGaccaagccgaaauCCGGcUCGUc -3'
miRNA:   3'- -AGGCgGUCGAGCUu---GCGC-------------GGCC-AGCG- -5'
12102 5' -60.3 NC_003309.1 + 22854 0.66 0.443975
Target:  5'- -gCGaCCGGCaUGAguguucccgcACGCacGCCGGUCGCc -3'
miRNA:   3'- agGC-GGUCGaGCU----------UGCG--CGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 10252 0.66 0.443975
Target:  5'- aUCCGCCcAGCcgCGAGCGacaCGCCGa--GCu -3'
miRNA:   3'- -AGGCGG-UCGa-GCUUGC---GCGGCcagCG- -5'
12102 5' -60.3 NC_003309.1 + 13181 0.66 0.443975
Target:  5'- cCCGCCAacaagcccacccGCggCGAaucGCGCgaaGCCGGaUCGCc -3'
miRNA:   3'- aGGCGGU------------CGa-GCU---UGCG---CGGCC-AGCG- -5'
12102 5' -60.3 NC_003309.1 + 10755 0.66 0.443975
Target:  5'- gCCGCCGcCUCaa--GCGCCGuccGUCGCu -3'
miRNA:   3'- aGGCGGUcGAGcuugCGCGGC---CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.