Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12105 | 3' | -54.9 | NC_003309.1 | + | 3355 | 0.66 | 0.738734 |
Target: 5'- uCGUUCACcaugUGAgcCGGGaucuuguagauCCGCGCGAu -3' miRNA: 3'- -GCGAGUGuuuaACU--GCCC-----------GGCGCGCU- -5' |
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12105 | 3' | -54.9 | NC_003309.1 | + | 44198 | 0.67 | 0.69589 |
Target: 5'- aGCUUuCGGAUUGACGcccGCgGCGCGc -3' miRNA: 3'- gCGAGuGUUUAACUGCc--CGgCGCGCu -5' |
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12105 | 3' | -54.9 | NC_003309.1 | + | 21909 | 0.67 | 0.68936 |
Target: 5'- uCGCcgUUGCAugccgUGACGaugccgauuggaucuGGCCGCGCGAc -3' miRNA: 3'- -GCG--AGUGUuua--ACUGC---------------CCGGCGCGCU- -5' |
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12105 | 3' | -54.9 | NC_003309.1 | + | 52733 | 0.67 | 0.663064 |
Target: 5'- aCGCgaaaAAGUUGGCGGGCCaGCcCGGc -3' miRNA: 3'- -GCGagugUUUAACUGCCCGG-CGcGCU- -5' |
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12105 | 3' | -54.9 | NC_003309.1 | + | 42668 | 0.68 | 0.618936 |
Target: 5'- uGCUCaACAGcga-ACGGGCCG-GCGAu -3' miRNA: 3'- gCGAG-UGUUuaacUGCCCGGCgCGCU- -5' |
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12105 | 3' | -54.9 | NC_003309.1 | + | 22252 | 0.69 | 0.531788 |
Target: 5'- cCGCUCACAAAUUGcGCGuucaGuaGCGCGGc -3' miRNA: 3'- -GCGAGUGUUUAAC-UGCc---CggCGCGCU- -5' |
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12105 | 3' | -54.9 | NC_003309.1 | + | 12496 | 0.71 | 0.429973 |
Target: 5'- uCGCUCACGcGAUUGAUGGccugauucaGCuCGCGCGc -3' miRNA: 3'- -GCGAGUGU-UUAACUGCC---------CG-GCGCGCu -5' |
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12105 | 3' | -54.9 | NC_003309.1 | + | 46671 | 0.71 | 0.429973 |
Target: 5'- gCGCUCAgG---UGAcCGGGCCgGCGCGu -3' miRNA: 3'- -GCGAGUgUuuaACU-GCCCGG-CGCGCu -5' |
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12105 | 3' | -54.9 | NC_003309.1 | + | 4872 | 0.73 | 0.332367 |
Target: 5'- gCGCUUGCAcccgcuGAUUGAC-GGCUGCGCGu -3' miRNA: 3'- -GCGAGUGU------UUAACUGcCCGGCGCGCu -5' |
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12105 | 3' | -54.9 | NC_003309.1 | + | 27949 | 0.73 | 0.316465 |
Target: 5'- uGCaUCGCAGAUgcgucgcGGCGGGCaCGCGCa- -3' miRNA: 3'- gCG-AGUGUUUAa------CUGCCCG-GCGCGcu -5' |
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12105 | 3' | -54.9 | NC_003309.1 | + | 6160 | 1.09 | 0.00106 |
Target: 5'- cCGCUCACAAAUUGACGGGCCGCGCGAu -3' miRNA: 3'- -GCGAGUGUUUAACUGCCCGGCGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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