miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12105 5' -61.7 NC_003309.1 + 6124 1.12 0.00015
Target:  5'- cGCUUACGCGCCCCAGGCCACGCCGGCc -3'
miRNA:   3'- -CGAAUGCGCGGGGUCCGGUGCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 11523 0.86 0.014254
Target:  5'- uGCUUGCGCGCCCUucugcgacgcgAGGCUcgccgugucgaucGCGCCGGCg -3'
miRNA:   3'- -CGAAUGCGCGGGG-----------UCCGG-------------UGCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 540 0.73 0.122877
Target:  5'- gGCUU-UGCGCCgaCCAGGCgcUGCCGGCu -3'
miRNA:   3'- -CGAAuGCGCGG--GGUCCGguGCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 10576 0.73 0.126218
Target:  5'- cGCUUGCGcCGCCgCCucgacGGCaCGCGCuuCGGCa -3'
miRNA:   3'- -CGAAUGC-GCGG-GGu----CCG-GUGCG--GCCG- -5'
12105 5' -61.7 NC_003309.1 + 28493 0.71 0.19226
Target:  5'- ---aGCgGCGaCCCgCGcGCCACGCCGGCc -3'
miRNA:   3'- cgaaUG-CGC-GGG-GUcCGGUGCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 11993 0.69 0.25378
Target:  5'- uGCUgcccGCGCGCggCAGccgcggcgcgcGCCGCGUCGGCg -3'
miRNA:   3'- -CGAa---UGCGCGggGUC-----------CGGUGCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 10866 0.69 0.260111
Target:  5'- cGCUcGCGCGCCugCguGGCaagcgcgacauCACGCuCGGCu -3'
miRNA:   3'- -CGAaUGCGCGG--GguCCG-----------GUGCG-GCCG- -5'
12105 5' -61.7 NC_003309.1 + 45955 0.69 0.266569
Target:  5'- cGCgcaugACGCGCUUCGGGau-CGCCGGa -3'
miRNA:   3'- -CGaa---UGCGCGGGGUCCgguGCGGCCg -5'
12105 5' -61.7 NC_003309.1 + 22145 0.69 0.266569
Target:  5'- cGCgacACGCGCCCC--GCCAguCGCCcGCa -3'
miRNA:   3'- -CGaa-UGCGCGGGGucCGGU--GCGGcCG- -5'
12105 5' -61.7 NC_003309.1 + 37631 0.68 0.273157
Target:  5'- gGC-UGCGauaaCGUCCCGgccGGCUACGUCGGUg -3'
miRNA:   3'- -CGaAUGC----GCGGGGU---CCGGUGCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 48651 0.68 0.273157
Target:  5'- uGCUUcaaaAUGCGCUCCuguGGCgAuucCGUCGGCg -3'
miRNA:   3'- -CGAA----UGCGCGGGGu--CCGgU---GCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 22388 0.68 0.273157
Target:  5'- cGC-UGCGCGUcgaacgCCCGcgcGGCCugcuCGUCGGCa -3'
miRNA:   3'- -CGaAUGCGCG------GGGU---CCGGu---GCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 6509 0.68 0.279874
Target:  5'- cGCUUGcCGCGCgCCCGGGaUCACGaCGcGUu -3'
miRNA:   3'- -CGAAU-GCGCG-GGGUCC-GGUGCgGC-CG- -5'
12105 5' -61.7 NC_003309.1 + 44446 0.68 0.279874
Target:  5'- ---gACGuCGCCC--GGCCGacUGCCGGCg -3'
miRNA:   3'- cgaaUGC-GCGGGguCCGGU--GCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 47973 0.68 0.300814
Target:  5'- uGCccgUGCgGCGCgCCAGcUCGCGCuCGGCg -3'
miRNA:   3'- -CGa--AUG-CGCGgGGUCcGGUGCG-GCCG- -5'
12105 5' -61.7 NC_003309.1 + 7393 0.68 0.303695
Target:  5'- cGCUUACGCGCCUCgucacGGaucaccuucgcaccaGCCAgCGUCGcGCg -3'
miRNA:   3'- -CGAAUGCGCGGGG-----UC---------------CGGU-GCGGC-CG- -5'
12105 5' -61.7 NC_003309.1 + 16962 0.67 0.315433
Target:  5'- aGCg-AUGCGCCCCAcGGCUGCGCg--- -3'
miRNA:   3'- -CGaaUGCGCGGGGU-CCGGUGCGgccg -5'
12105 5' -61.7 NC_003309.1 + 53262 0.67 0.346262
Target:  5'- cGCUcGCGCGCCgUCuucGCCGCGUgacagucaCGGCa -3'
miRNA:   3'- -CGAaUGCGCGG-GGuc-CGGUGCG--------GCCG- -5'
12105 5' -61.7 NC_003309.1 + 44885 0.67 0.354299
Target:  5'- cGCUUGC-CGUacacggcugaCUCAGGUU-CGCCGGCg -3'
miRNA:   3'- -CGAAUGcGCG----------GGGUCCGGuGCGGCCG- -5'
12105 5' -61.7 NC_003309.1 + 9492 0.67 0.354299
Target:  5'- cGCUUGCgGCGUUCgAGGCaaACGCC-GCa -3'
miRNA:   3'- -CGAAUG-CGCGGGgUCCGg-UGCGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.