Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12105 | 5' | -61.7 | NC_003309.1 | + | 540 | 0.73 | 0.122877 |
Target: 5'- gGCUU-UGCGCCgaCCAGGCgcUGCCGGCu -3' miRNA: 3'- -CGAAuGCGCGG--GGUCCGguGCGGCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 1293 | 0.66 | 0.379191 |
Target: 5'- gGCUgucgACGCGCgCCCAuGCCA-GUCaGCa -3' miRNA: 3'- -CGAa---UGCGCG-GGGUcCGGUgCGGcCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 5068 | 0.66 | 0.387745 |
Target: 5'- uGCacggGCGCGgCggCCGGuGCCGCGaCGGCg -3' miRNA: 3'- -CGaa--UGCGCgG--GGUC-CGGUGCgGCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 5771 | 0.66 | 0.362467 |
Target: 5'- aGCggaACGUGCgCgGGGCCAUgauccaGCCGGg -3' miRNA: 3'- -CGaa-UGCGCGgGgUCCGGUG------CGGCCg -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 6124 | 1.12 | 0.00015 |
Target: 5'- cGCUUACGCGCCCCAGGCCACGCCGGCc -3' miRNA: 3'- -CGAAUGCGCGGGGUCCGGUGCGGCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 6509 | 0.68 | 0.279874 |
Target: 5'- cGCUUGcCGCGCgCCCGGGaUCACGaCGcGUu -3' miRNA: 3'- -CGAAU-GCGCG-GGGUCC-GGUGCgGC-CG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 7393 | 0.68 | 0.303695 |
Target: 5'- cGCUUACGCGCCUCgucacGGaucaccuucgcaccaGCCAgCGUCGcGCg -3' miRNA: 3'- -CGAAUGCGCGGGG-----UC---------------CGGU-GCGGC-CG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 7767 | 0.66 | 0.379191 |
Target: 5'- --aUACG-GCgCCGGcGCCuuCGCCGGUg -3' miRNA: 3'- cgaAUGCgCGgGGUC-CGGu-GCGGCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 9492 | 0.67 | 0.354299 |
Target: 5'- cGCUUGCgGCGUUCgAGGCaaACGCC-GCa -3' miRNA: 3'- -CGAAUG-CGCGGGgUCCGg-UGCGGcCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 10576 | 0.73 | 0.126218 |
Target: 5'- cGCUUGCGcCGCCgCCucgacGGCaCGCGCuuCGGCa -3' miRNA: 3'- -CGAAUGC-GCGG-GGu----CCG-GUGCG--GCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 10866 | 0.69 | 0.260111 |
Target: 5'- cGCUcGCGCGCCugCguGGCaagcgcgacauCACGCuCGGCu -3' miRNA: 3'- -CGAaUGCGCGG--GguCCG-----------GUGCG-GCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 11523 | 0.86 | 0.014254 |
Target: 5'- uGCUUGCGCGCCCUucugcgacgcgAGGCUcgccgugucgaucGCGCCGGCg -3' miRNA: 3'- -CGAAUGCGCGGGG-----------UCCGG-------------UGCGGCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 11993 | 0.69 | 0.25378 |
Target: 5'- uGCUgcccGCGCGCggCAGccgcggcgcgcGCCGCGUCGGCg -3' miRNA: 3'- -CGAa---UGCGCGggGUC-----------CGGUGCGGCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 12103 | 0.66 | 0.396424 |
Target: 5'- cGCUUuccagcgagugaACGCcacuGCCCUucGCUACGCgGGCc -3' miRNA: 3'- -CGAA------------UGCG----CGGGGucCGGUGCGgCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 14164 | 0.66 | 0.387745 |
Target: 5'- aGCUUGcCGCcgacgaccucGUCCCAcaucaucuuGCCGCGCuCGGCg -3' miRNA: 3'- -CGAAU-GCG----------CGGGGUc--------CGGUGCG-GCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 16962 | 0.67 | 0.315433 |
Target: 5'- aGCg-AUGCGCCCCAcGGCUGCGCg--- -3' miRNA: 3'- -CGaaUGCGCGGGGU-CCGGUGCGgccg -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 17599 | 0.66 | 0.396424 |
Target: 5'- ---gACGUGUCCUgacGCUguaGCGCCGGCa -3' miRNA: 3'- cgaaUGCGCGGGGuc-CGG---UGCGGCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 22145 | 0.69 | 0.266569 |
Target: 5'- cGCgacACGCGCCCC--GCCAguCGCCcGCa -3' miRNA: 3'- -CGaa-UGCGCGGGGucCGGU--GCGGcCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 22388 | 0.68 | 0.273157 |
Target: 5'- cGC-UGCGCGUcgaacgCCCGcgcGGCCugcuCGUCGGCa -3' miRNA: 3'- -CGaAUGCGCG------GGGU---CCGGu---GCGGCCG- -5' |
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12105 | 5' | -61.7 | NC_003309.1 | + | 28493 | 0.71 | 0.19226 |
Target: 5'- ---aGCgGCGaCCCgCGcGCCACGCCGGCc -3' miRNA: 3'- cgaaUG-CGC-GGG-GUcCGGUGCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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