miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12110 5' -56.6 NC_003309.1 + 7667 1.08 0.000964
Target:  5'- cUCCGAGCACACGAUCGAUCGCGCGCGc -3'
miRNA:   3'- -AGGCUCGUGUGCUAGCUAGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 12377 0.67 0.619994
Target:  5'- aUCUGcGCACuGCGcuccuucagcuuGUUGAUCGCGuCGCGa -3'
miRNA:   3'- -AGGCuCGUG-UGC------------UAGCUAGCGC-GCGC- -5'
12110 5' -56.6 NC_003309.1 + 17777 0.67 0.613508
Target:  5'- -aCGGcGCACACgGAUCagccagccguuuuUCGCGCGCGg -3'
miRNA:   3'- agGCU-CGUGUG-CUAGcu-----------AGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 16001 0.67 0.609187
Target:  5'- -gCGAGCGCGaauUGGUCcGUCG-GCGCGg -3'
miRNA:   3'- agGCUCGUGU---GCUAGcUAGCgCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 24104 0.67 0.609187
Target:  5'- gCCGGGaUACACGccgauAUCGGcacCGCGCGCc -3'
miRNA:   3'- aGGCUC-GUGUGC-----UAGCUa--GCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 11861 0.67 0.607028
Target:  5'- -gCGAGCucGCGCGucagauuGUCGAuguugguUCGCGCGCc -3'
miRNA:   3'- agGCUCG--UGUGC-------UAGCU-------AGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 3314 0.67 0.598401
Target:  5'- gUCGAGCGCggaaaggcgcaGCGcGUCGAUCaGCGCuGCa -3'
miRNA:   3'- aGGCUCGUG-----------UGC-UAGCUAG-CGCG-CGc -5'
12110 5' -56.6 NC_003309.1 + 12649 0.67 0.598401
Target:  5'- -gCGAGC-CGCuGcUCGAgauagccgcgcUCGCGCGCGa -3'
miRNA:   3'- agGCUCGuGUG-CuAGCU-----------AGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 6769 0.67 0.587641
Target:  5'- gCCuGGUACuuGAUCGucacggCGCGCGCa -3'
miRNA:   3'- aGGcUCGUGugCUAGCua----GCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 5566 0.66 0.63081
Target:  5'- gUCUucGCGCGCGc-CGAUCGCG-GCGg -3'
miRNA:   3'- -AGGcuCGUGUGCuaGCUAGCGCgCGC- -5'
12110 5' -56.6 NC_003309.1 + 10901 0.66 0.63081
Target:  5'- gCCccGC-CGCGGUCGcgGUCGCcGCGCGu -3'
miRNA:   3'- aGGcuCGuGUGCUAGC--UAGCG-CGCGC- -5'
12110 5' -56.6 NC_003309.1 + 35042 0.66 0.637301
Target:  5'- aCCGAGCGCcugugcgacgccgACGAcgugaucgauaugaUCGGUgaGCGCGCc -3'
miRNA:   3'- aGGCUCGUG-------------UGCU--------------AGCUAg-CGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 5158 0.66 0.684716
Target:  5'- -gCGAGCuGCGCG-UCGc-CGCGCGCc -3'
miRNA:   3'- agGCUCG-UGUGCuAGCuaGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 19023 0.66 0.684716
Target:  5'- aUCUGcGCGC-CGucGUCGAUCGC-CGCa -3'
miRNA:   3'- -AGGCuCGUGuGC--UAGCUAGCGcGCGc -5'
12110 5' -56.6 NC_003309.1 + 36237 0.66 0.684716
Target:  5'- -aCGAGCACucCGAUCGccaguAUCGCcCGUGc -3'
miRNA:   3'- agGCUCGUGu-GCUAGC-----UAGCGcGCGC- -5'
12110 5' -56.6 NC_003309.1 + 47024 0.66 0.663228
Target:  5'- aCUGcacuGCACGCGG-CGAUUG-GCGCGu -3'
miRNA:   3'- aGGCu---CGUGUGCUaGCUAGCgCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 46119 0.66 0.663228
Target:  5'- --aGAGCGCACGGUCGGcaccUCGacaccgaaCGCGaCGg -3'
miRNA:   3'- aggCUCGUGUGCUAGCU----AGC--------GCGC-GC- -5'
12110 5' -56.6 NC_003309.1 + 15454 0.66 0.652437
Target:  5'- gCCGgaAGUuCACGGcgUCGAgguaGCGCGCGa -3'
miRNA:   3'- aGGC--UCGuGUGCU--AGCUag--CGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 12026 0.66 0.645953
Target:  5'- gCCGcAGUggACGCGAUCGucucGUCgaaagccugcugcccGCGCGCGg -3'
miRNA:   3'- aGGC-UCG--UGUGCUAGC----UAG---------------CGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 21994 0.66 0.641627
Target:  5'- cUCCGcGUGCuCGAugagccguugcUCGAgcCGCGCGCGg -3'
miRNA:   3'- -AGGCuCGUGuGCU-----------AGCUa-GCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.