miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12110 5' -56.6 NC_003309.1 + 3314 0.67 0.598401
Target:  5'- gUCGAGCGCggaaaggcgcaGCGcGUCGAUCaGCGCuGCa -3'
miRNA:   3'- aGGCUCGUG-----------UGC-UAGCUAG-CGCG-CGc -5'
12110 5' -56.6 NC_003309.1 + 5158 0.66 0.684716
Target:  5'- -gCGAGCuGCGCG-UCGc-CGCGCGCc -3'
miRNA:   3'- agGCUCG-UGUGCuAGCuaGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 5566 0.66 0.63081
Target:  5'- gUCUucGCGCGCGc-CGAUCGCG-GCGg -3'
miRNA:   3'- -AGGcuCGUGUGCuaGCUAGCGCgCGC- -5'
12110 5' -56.6 NC_003309.1 + 6103 0.68 0.545042
Target:  5'- gCCGgccAGCACAgCGAUCGAcucgaCGUGaCGCGg -3'
miRNA:   3'- aGGC---UCGUGU-GCUAGCUa----GCGC-GCGC- -5'
12110 5' -56.6 NC_003309.1 + 6769 0.67 0.587641
Target:  5'- gCCuGGUACuuGAUCGucacggCGCGCGCa -3'
miRNA:   3'- aGGcUCGUGugCUAGCua----GCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 7667 1.08 0.000964
Target:  5'- cUCCGAGCACACGAUCGAUCGCGCGCGc -3'
miRNA:   3'- -AGGCUCGUGUGCUAGCUAGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 9535 0.69 0.483231
Target:  5'- aUCGAacuGCGCGCcgcGUCGAgCGCGCGCa -3'
miRNA:   3'- aGGCU---CGUGUGc--UAGCUaGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 9721 0.67 0.587641
Target:  5'- gCCGucGCGucgaGCGGUUGccguguGUCGCGCGCGa -3'
miRNA:   3'- aGGCu-CGUg---UGCUAGC------UAGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 10500 0.7 0.406527
Target:  5'- gCCGAcuGCAuCGCGAggcuuucgCGcAUCGCGCGCa -3'
miRNA:   3'- aGGCU--CGU-GUGCUa-------GC-UAGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 10901 0.66 0.63081
Target:  5'- gCCccGC-CGCGGUCGcgGUCGCcGCGCGu -3'
miRNA:   3'- aGGcuCGuGUGCUAGC--UAGCG-CGCGC- -5'
12110 5' -56.6 NC_003309.1 + 10974 0.7 0.443949
Target:  5'- aCCGAGCGCAUcAUCGugccCGUacGCGCGa -3'
miRNA:   3'- aGGCUCGUGUGcUAGCua--GCG--CGCGC- -5'
12110 5' -56.6 NC_003309.1 + 11241 0.7 0.434411
Target:  5'- cUCCG-GUACGCGGacugcgcgUCGucugcCGCGCGCGa -3'
miRNA:   3'- -AGGCuCGUGUGCU--------AGCua---GCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 11861 0.67 0.607028
Target:  5'- -gCGAGCucGCGCGucagauuGUCGAuguugguUCGCGCGCc -3'
miRNA:   3'- agGCUCG--UGUGC-------UAGCU-------AGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 12026 0.66 0.645953
Target:  5'- gCCGcAGUggACGCGAUCGucucGUCgaaagccugcugcccGCGCGCGg -3'
miRNA:   3'- aGGC-UCG--UGUGCUAGC----UAG---------------CGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 12377 0.67 0.619994
Target:  5'- aUCUGcGCACuGCGcuccuucagcuuGUUGAUCGCGuCGCGa -3'
miRNA:   3'- -AGGCuCGUG-UGC------------UAGCUAGCGC-GCGC- -5'
12110 5' -56.6 NC_003309.1 + 12497 0.72 0.30469
Target:  5'- gUCGcuCACGCGAUUGAuggccugauucagcUCGCGCGCGu -3'
miRNA:   3'- aGGCucGUGUGCUAGCU--------------AGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 12649 0.67 0.598401
Target:  5'- -gCGAGC-CGCuGcUCGAgauagccgcgcUCGCGCGCGa -3'
miRNA:   3'- agGCUCGuGUG-CuAGCU-----------AGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 15454 0.66 0.652437
Target:  5'- gCCGgaAGUuCACGGcgUCGAgguaGCGCGCGa -3'
miRNA:   3'- aGGC--UCGuGUGCU--AGCUag--CGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 16001 0.67 0.609187
Target:  5'- -gCGAGCGCGaauUGGUCcGUCG-GCGCGg -3'
miRNA:   3'- agGCUCGUGU---GCUAGcUAGCgCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 16149 0.69 0.483231
Target:  5'- gCCGAGCgACACGAUCacccacuUCGCGaUGCc -3'
miRNA:   3'- aGGCUCG-UGUGCUAGcu-----AGCGC-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.